LOC118940167 (LOC106566237)


Basic Information

Item Value
gene id LOC118940167
gene name LOC106566237
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 93034702 ~ 93038359 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948447.1
atgtGTGCGGTGTGTCCTCTGGATGAGTTGTGTGATGTGGCCCATGAGTTTGGAGCCATCATGTTTGTAGACGAGGTCCATGCGGTGGGGCTGTACGGCGCTAGGGGAGGAGGTATCGGGGACCGAGACGGCATCATGCACAAGATGGACATCATCTCTGGAACACTGGGCAAGGCGTTTGGCTGTGTTGGAGGTTACATCGCCAGTACCGCCGCTCTGGTGGACACGGTGCGTAGTTACGCTGCAGGCTTCATATTCACCACGTCTCTGCCCCCCATGCTGCTGGCGGGCGCCTGTGAGTCCATCCAGACCCTTAAAGGGGAGGAGGGCCGCGCCCTCCGGAGGAAACACCAGCGAGTCCATCCAGACCCTTAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006782 protoporphyrinogen IX biosynthetic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0003870 5-aminolevulinate synthase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948447.1 True 375 mRNA 0.59 3 93034702 93038359

Neighbor

gene id symbol gene type direction distance location
LOC110494836 LOC106566241 coding downstream 103495 92902401 ~ 92931207 (-)
LOC110494834 NA coding downstream 198264 92828908 ~ 92836438 (-)
LOC118940649 NA coding downstream 201951 92832524 ~ 92832751 (-)
LOC110504360 LOC106566233 coding downstream 375664 92449258 ~ 92659038 (-)
LOC118940113 NA coding downstream 598769 92434919 ~ 92435933 (-)
LOC110494837 LOC106566237 coding upstream 4247 93042606 ~ 93054175 (-)
LOC118940168 NA coding upstream 41988 93080347 ~ 93082272 (-)
LOC110494849 LOC106566252 coding upstream 439086 93477445 ~ 93494951 (-)
LOC110493308 NA coding upstream 461841 93500200 ~ 93529938 (-)
LOC110494848 pdhb coding upstream 493331 93531690 ~ 93557343 (-)
G1506621 NA non-coding downstream 4200 93002869 ~ 93030502 (-)
G1506605 NA non-coding downstream 44925 92986410 ~ 92989777 (-)
G1506565 NA non-coding downstream 94695 92939767 ~ 92940007 (-)
G1506561 NA non-coding downstream 96707 92937775 ~ 92937995 (-)
G1506975 NA non-coding upstream 20210 93058569 ~ 93059133 (-)
G1506996 NA non-coding upstream 73351 93111710 ~ 93111982 (-)
G1506997 NA non-coding upstream 73762 93112121 ~ 93112711 (-)
G1506998 NA non-coding upstream 74577 93112936 ~ 93120114 (-)
G1507007 NA non-coding upstream 97853 93136212 ~ 93138244 (-)
G1506543 NA other downstream 170728 92863102 ~ 92863974 (-)
G1506231 NA other downstream 535754 92494406 ~ 92498948 (-)
G1506160 NA other downstream 695259 92338053 ~ 92339443 (-)
G1505789 NA other downstream 863985 92115293 ~ 92170717 (-)
G1506965 NA other upstream 5372 93043731 ~ 93044365 (-)
G1506957 NA other upstream 47323 93085682 ~ 93088708 (-)
G1507093 NA other upstream 367934 93406293 ~ 93407212 (-)
G1507961 timp4 other upstream 1125731 94164090 ~ 94198079 (-)

Expression


Co-expression Network