LOC110494837 (LOC106566237)


Basic Information

Item Value
gene id LOC110494837
gene name LOC106566237
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 93042606 ~ 93054175 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570161.2
TTATAAGCCGGTTGCGTATCCCGGTCCTGTCGTTCGTCCTCAGTGTAGGATAACGAAGCATTATCGTAATATATTTACACTGAAACAGCGTTAAGATCTTGCCACGGTATATTTTAATTTCTTTATTCATTCGTGAGAGGGTGACCCGAAACACACTGAGCGAGGCTTTGACAATCACTGTAAGGATGGAGACTTTAATTCGCCGCTGCCCGTTCCTGTCCCGCGTGCCCCAGACCTTCCTCCAGCAGGCCCGGAAATCCCTGGTGGTCTATGCCCAGAAATGTCCTGTGATGATGAACCTGGCCTCCAAGCCTCTGGCccgctctctctgctcctcctcagCTAGCTTCCAGAAGGCTGAGGACATCGTGACTTCAGCCCAGACACCAGGAGCCAATGGGGGCACTACCACCAAGTTGCCTCAGAGCCACCCCATGCCCCCCTCTGGCCAGGCCTCGGGGGCCTCCAAGTGCCCCTTCCTGGCGGCTGAGATGGGCCAGAACAGCGGTGTGGTGCGCCAGGCCAGCCTCCAGCTGCAGGAGGATGTGCAGGAGGTCCGCACCATCCAGAAAGATGTGAGCCCAGCCCAGGTCCTGGCCAGCTCTTCTGGTGCGGTCAACACCTCCGATCTGATGAAGAAGCTGCTGAAGCAACGTCCAACCAGGATGTCCCAACTGCTGCAGGAGAACATGCCCAGCTTCTCTAACTTCCGCTACGATGAGTTCTTTGAGAGGAAGATTGAGGAGAAGAAGAGTGACCACACGTACCGAGTCTTTAAGACGGTTAACCGGCGAGCCACGGACTTCCCCATGGGTGACGACTACACCGATTCCCTTAGCGACAGGAGAGACGTATCTGTGTGGTGCTCCAACGACTACCTGGGCATGAGCAGACACCCGCGGGTCGTCAACTCCATCACGGAGACGTTGCATAAGCACGGCAGTGGGGCTGGAGGAACCAGGAACATCTCTGGGACCAGTAAGTTCCACGTGGAACTGGAACAGGAACTAGCAGACCTCCACAGGAAGGACGCTGCGCTCCTTTTCACTTCCTGCTTCGTAGCCAATGACTCCACCTTGTTCACCCTGGCCAAGATGATGCCAGgctgtGAGATCTACTCTGATGCAGGGAATCACGCCTCCATGATCCAAGGCATCCGGAACAGTGGAGCCAAGAAGTTCATCTTCCGTCACAATGACCCCGACCACTTGAGAGAGCTGCTGCTGAAATCAGACCCCTCCTCTCCAAAGATCGTAGCCTTCGAGACAGTCCACTCCATGGATGGGGCGGTGTGTCCTCTGGATGAGTTGTGTGATGTGGCCCATGAGTTTGGAGCCATCACGTTTGTTGACGAGGTCCATGCGGTGGGGCTGTACGGCGCTAGGGGAGGAGGTATCGGGGACCGAGACGGCATCATGCACAAGATGGACATCATCTCTGGAACACTGGGCAAGGCGTTTGGCTGTGTTGGAGGCTACATCGCCAGTACCGCCGCCCTGGTGGACACGGTGCGTAGTTACGCTGCAGGCTTCATATTCACCACGTCTCTGCCTCCCATGCTGCTGGCGGGCGCCCGCGAGTCCATCCAGACCCTTAAAGGGGAGGAGGGCCGCGCCCTCCGGAGGAAACACCAGCGCAACGTCAAGCTGCTGAGACAGATGCTCATGGACTCTGGACTGCCCGTCGTCCACTGTCCCTCTCACATCATCCCTGTCAGGGTGTCCGACGCGGAGAAGAACACGGAGATCTCTGACATCATGATGAGTCGTTACAACATTTATGTCCAGGCCATCAACTATCCCACGGTCGCCAGGGGGGAGGAGCTTCTTCGCATCGCCCCCACGCCACACCACACCCCTCAGATGATGATGTACTTTGTCGAGAAGTTGGTTCAGACGTGGAAGGAGTCCGGTCTACCTCTGAAGTCCCATTCTTCAGCAGGGTGTAACTTCTGCCGGCAGCCACTGCACTTTGAGCTGATGACTGAGGGAGAAGAGTCTTACTTCAGAGGCCTGACCCACCCCATCTCCGCTCACGCATGACGACACCTGGGACGACACGAAACCCCATGTCACCGTCATTGGCACCTTTTTTATTACCTTGCTAGTGCGCTACTTTTTCCACCACGGGgccgtagggctctggtcaaaagtagcacactagcAAGGGAAGAGGGTACCGTTTGTGACATAGaatgtatatttgtattttataaGTGTCATAACTTATTGAGTGTTCCATGGGCACTAGATTGTCTAAATAAATATAACTTTAATGTTT

Function

NR:

description
5-aminolevulinate synthase, nonspecific, mitochondrial-like

GO:

id name namespace
GO:0006782 protoporphyrinogen IX biosynthetic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0003870 5-aminolevulinate synthase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
K00643 E2.3.1.37, ALAS; 5-aminolevulinate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570161.2 True 2280 mRNA 0.55 11 93042606 93054175

Neighbor

gene id symbol gene type direction distance location
LOC118940167 LOC106566237 coding downstream 4247 93034702 ~ 93038359 (-)
LOC110494836 LOC106566241 coding downstream 111399 92902401 ~ 92931207 (-)
LOC110494834 NA coding downstream 206168 92828908 ~ 92836438 (-)
LOC118940649 NA coding downstream 209855 92832524 ~ 92832751 (-)
LOC110504360 LOC106566233 coding downstream 383568 92449258 ~ 92659038 (-)
LOC118940168 NA coding upstream 26172 93080347 ~ 93082272 (-)
LOC110494849 LOC106566252 coding upstream 423270 93477445 ~ 93494951 (-)
LOC110493308 NA coding upstream 446025 93500200 ~ 93529938 (-)
LOC110494848 pdhb coding upstream 477515 93531690 ~ 93557343 (-)
LOC118940515 NA coding upstream 513640 93567815 ~ 93572808 (-)
G1506621 NA non-coding downstream 12104 93002869 ~ 93030502 (-)
G1506605 NA non-coding downstream 52829 92986410 ~ 92989777 (-)
G1506565 NA non-coding downstream 102599 92939767 ~ 92940007 (-)
G1506561 NA non-coding downstream 104611 92937775 ~ 92937995 (-)
G1506975 NA non-coding upstream 4394 93058569 ~ 93059133 (-)
G1506996 NA non-coding upstream 57535 93111710 ~ 93111982 (-)
G1506997 NA non-coding upstream 57946 93112121 ~ 93112711 (-)
G1506998 NA non-coding upstream 58761 93112936 ~ 93120114 (-)
G1507007 NA non-coding upstream 82037 93136212 ~ 93138244 (-)
G1506543 NA other downstream 178632 92863102 ~ 92863974 (-)
G1506231 NA other downstream 543658 92494406 ~ 92498948 (-)
G1506160 NA other downstream 703163 92338053 ~ 92339443 (-)
G1505789 NA other downstream 871889 92115293 ~ 92170717 (-)
G1506957 NA other upstream 31507 93085682 ~ 93088708 (-)
G1507093 NA other upstream 352118 93406293 ~ 93407212 (-)
G1507961 timp4 other upstream 1109915 94164090 ~ 94198079 (-)
phf2 phf2 other upstream 1807451 94861445 ~ 94996238 (-)

Expression


Co-expression Network