LOC118940514


Basic Information

Item Value
gene id LOC118940514
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 93057698 ~ 93078808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950971.1
AACTTTAAGGAAGAAGAAGGATAGAGTGGGGGGGGGAGCTAGACAGCCTGCGgtgccgctttgtggacaacAACTCCCATTGTTGGGCGGAGAGAGACAAGTAATCTTGTTGGTATATCTATTATCTTCGTTTGAAAAGCGCATCTGTACATTGTATCGGATTAGTATGCGTTGAATACTGCATCAATTTCCCATCACTAGTTGGTTTGTCATTTTGGTAGGGACTTAGGAAGTAGCTATCGTACCGGGGTTCGTGTTAAGCATCGGAATTAACGGAGCCATGGCGAAAAGTCTGTCCCTTGTTACTGTCATTTTGTGTGGGACTCTGATCCCCTTCGTGACAGCTGGAGAGGACTGTGAAGCCTACCTAAATGCCTTCAGCCATTACAAAGCCAAACTGGACTGCAGTACATTTCAGTGGTGCTGTGGAACGTGTGAGAATAGATATTGCTGCAGCAGCCCATCTCTCAGGCTGACTGAGTCTGAACAGGAAAACTGCATATACAGtggcAATATGAGCACTTTGACCATCTCGTCATTCGTAGCGACAGCTGTCATCTTCACCATCAGTTTAGTCTGTTGCTGTGTGTGTCCCTGCTGTTGCCTGTACAAAATGTGCCGGAAGCCCAGACCGGTGATAGCCACGACCGCCCACACAACGGTGGTGAATACTCACTACCCCCAGCAGCCCGTCCAGCCCTACCAGGGggccccccagtaccctgcctacCAGACCATGCCGGTCCAGCCTGGGTATGGGGTTCAGCCTCAACCCGGCTATGGAGGTGGCCAGCCCATACCCACAGCACCAGGCTACCAGGGACAGCCTTTCCAGCCAGGACCACCCCCTCCTTACCAAGAGACTGGTCCAGCCTATCCTCCTGCTATCCCAGTGTCTTATAGTCAGGCTGGGTTCAGTCCAGGACAGCTATCTTACCCCCTCCAGGCTCCAGCGCAGCCCAGCTACCCAGCCCAGCCTCAGCCAGCCTATCCCTGTGCACCTCCCGCCCAGCCCGACTTCCTTTCTGCCCAGCCTGCTTACAACCCTGCCTTCATGGAGCCCCAGCCTCCCAAGACTGGCAACTGAAGCAGCTCCTCCCCTCCCATTCTCCATCCACCCGCTCTCATgggagacggacggacggacgggtgggatagaaacagacagactgactgactggtgagatagaaacagacagactgactgactggtgggatagaaacagacagactgactgactggtgggatagaa

Function

NR:

description
protein shisa-4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950971.1 True 1253 mRNA 0.54 5 93057698 93078808

Neighbor

gene id symbol gene type direction distance location
LOC110504503 LOC106566236 coding upstream 742626 92282926 ~ 92317484 (+)
LOC118940166 NA coding upstream 810602 92246394 ~ 92247096 (+)
LOC118940512 NA coding upstream 1039498 92015537 ~ 92020588 (+)
LOC110519238 vgll4 coding upstream 1045731 91915402 ~ 92011967 (+)
LOC110494826 LOC106601490 coding upstream 1199068 91837358 ~ 91867163 (+)
LOC110494838 ippk coding downstream 21333 93100141 ~ 93131637 (+)
LOC110511384 ecm2 coding downstream 73418 93152226 ~ 93183983 (+)
LOC110494840 LOC106566248 coding downstream 147711 93226519 ~ 93242451 (+)
stab1 LOC106566251 coding downstream 215255 93294063 ~ 93442319 (+)
il10b il10b coding downstream 653161 93731969 ~ 93740530 (+)
G1506649 NA non-coding upstream 13526 93043641 ~ 93044172 (+)
G1506614 NA non-coding upstream 26302 93029833 ~ 93031396 (+)
G1506616 NA non-coding upstream 39301 93008622 ~ 93018397 (+)
G1506617 NA non-coding upstream 42273 93013567 ~ 93015425 (+)
G1506612 NA non-coding upstream 44267 93000489 ~ 93013431 (+)
G1506633 NA non-coding downstream 3538 93082346 ~ 93084882 (+)
G1506635 NA non-coding downstream 6972 93085780 ~ 93087724 (+)
G1506670 NA non-coding downstream 35940 93114748 ~ 93119698 (+)
G1506671 NA non-coding downstream 38372 93117180 ~ 93119109 (+)
G1506631 NA non-coding downstream 111389 93190197 ~ 93192400 (+)
G1506406 NA other upstream 190664 92866206 ~ 92867034 (+)
G1505924 LOC106566233 other upstream 607757 92447734 ~ 92467632 (+)
G1505894 NA other upstream 736921 92319545 ~ 92320777 (+)
G1503337 NA other upstream 2834039 90221545 ~ 90223659 (+)
G1506889 NA other downstream 498009 93576817 ~ 93577604 (+)
G1507612 NA other downstream 1271405 94350213 ~ 94351111 (+)
G1508290 NA other downstream 1594755 94673563 ~ 94673937 (+)
G1508614 NA other downstream 2002596 95081404 ~ 95082050 (+)
G1508618 NA other downstream 2011460 95090268 ~ 95090709 (+)

Expression


Co-expression Network