LOC110511384 (ecm2)


Basic Information

Item Value
gene id LOC110511384
gene name ecm2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 93152226 ~ 93183983 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950973.1
tctccgtctgtttTAAAAACTTGTATCTGCTTGGCAGAGTAGAGCACACTGTCTAGTTTAGTAAGTAACCTCTCCCTGTGTTTAGCTTTCAGACTCTGACTGCGGCTAGGCTAGCCTTGGCGTCCCCAGACTTCTATGAGCGTAGCGTAGCAGAGCAggctcctctcactctctgtctctccgtctgtttTAAAACTTGCATCTGCTTGGCAGAGTAGAGCACACTGTCCTACATCTGTCTTGGGAGAGGGAAGAAATTACTTGGCCTTGCACCGTACAGACAGCCTGCCTGCGAACCTCCGaCTAGCCTGACTTTCTCCTGAGCCTCTATGGAGCGCTGGGTTCTCTTCTCTCTATTGCTCCTGGTCTCCCTGTATTTGGAGGTGTCTGGAGCTGAAGCTGGGGCCCAGGACCAGAGAGTGCTGACTggccaggggaggaggaggaggagagggccatGGGAACCAGGGGGCCCGGAGTTCAACCAGCCCCAGCGAGGAGAGCTAGAatgggggaagaggaggaaggcagGAGGGCCTGGGCAGGGGAGAGCCAGGGGGAACAGGGACAACCAGCGATCTCAAACCCCTCTGGGTCTGACGAGGCTGGGGAGCCTTCCAGCCAACGCCGGAGGAGACGATGGAGCGTCTATTTTCATTGAGTCATACAAGAGTGTTGACGAGAGACAGACTAACTACAATGTCATCCCGGGTAAAAAGGGCCAGTGTGTGTACCAGGGCATCACCATGTTTGAGCAGGCCGTCTGGTCCCCCAAAccgtgtgttacctgtctgtgtAGCGGAGGGGAGGTGCTGTGTGACGAGGTCACATGTCCTCCTCATCGATGTCACTTCCCCTACACCCCCTCTGGCGAGTGCTGTCCTGTCTGTATGGacacagcTTCCCGTGGTGATGTCCTTGACTTCTCTGGCGATTCCCCAGTAGCCAATGACCCAGACTCTGTGACCCCTGACCTTGACCCAATCCTTGACCCCGTGGTGACCCGCACCAAGGCCGAGATTGAGCTCCTGAATAGAGAGGAGGAGCAGCGCCTCCTCgagaaggaaaagaggaggaagaaaCAGAAGGAGGAGGCGGATAGACAGCGGCGGcggcaggaggagaagaggcggcggcaggaggagaagaggaggcaggaggaggagaggctgcaaatggagaaggaagagagaaggcAGGAAGAGGCAAGGAGACTAAAGGAGGAGGTGGCCATGAAGGAGCGGGAGAGgaagctggaggaggagaggagaagacatgaGGAGGAGCTAAAGGAGAAACTGAGGGAACTAGCAGAGctggaagaggaagaagaagaagaggaggacgaagaggaggagatggagtggCTGCTGAGAGGAGATGTTTTCCAAATGTTTCCAGATGAGCCGACCGAAGAGgacctccttcctcctcccctagCCAAGCCCactgacagagaagaggaggatggaaaagAGGTGGTGGTACATAGACCTGGGATCACCCTCCCGCTAGGTTGTGATATCTCTGATGTCACTGTGACGTGTGAGAACGCTAAACTGACCAACTTCCCTCCTCTCAACATCCCTGAGCTCAAGTCCCTAAGTCTGGAGGGTAACTCCATCACAACCATCCCAGTGGGGGCGTTCAACGGCATCCCCAACCTGGAGTCCATCAACCTGGGAAAGAATAAGTTGACAACTGCTGGAATCGCCCCACACACCTTCAAAGGCCTGAAGTTCCTGAGCCGTCTTTACCTGGACAACAACCTCCTAGAGACGGTCCTACCAGACTTTCCATCAACACTACAGGAGCTGAAGATCAACGAGAATCACCTCAAAGGGATCGAAGAGAACAGCTTCCAAGGTCTGAGCGACCTGTTGACCTTGGAGTTGGAGGGGAATCTCCTGAGTGAAGGCAACGTGGATCCTCTAGCTTTCAGACCCCTCTCCCAGCTCTCCTACCTCCGTCTGGGCAGAAACCACTTCAGGACCGTCCCCCAGGGCTTGCCCCCATCTCTACTGGAGGTTTATCTTGAGAACAACCTGATAGAAGAGATATCTGACTCTGTCTTCAACCAAACCACTAACCTGAACGTGATCTCACTGAGACACAACAGACTGGAGGAGTCCAGGATTGCACCTCTAGCATGGATCAACCACAAGAACCTGGAGTCCATTGACCTGTCCTACAACCGTCTGTACCTGGTCCCATCCTACCTGCCCAGAGCTCTGGTCCACCTGGTCTTGGTAGGGAACCAGATTGAGAGGATCCCAGGGTTTGTGTTTGCCCACATGGAGCCGGGCATAGAGtacctgtacctgtcccacaacAAGCTGGATGGGGAGGGAGTGGAGCCACAGTCCTTCTTGGGCACCTATACCTCCATGACAGAGCTGTGTTTAGACCACAACCAGCTGATAACGGTTCCCCTTGGTATCAACCAGATGAGCACTCTGCACTTCCTGCGcctcaataacaacaacattAGGACGTTTGCAGAGGACGCTTTCTGTGACCCCGAGAACGACGAGGACGCTAACATATTGACGCTGCGTCTGGAGAACAACTACATCGACCCCAGGAAGATCTCTTCCTCCGCCTTCTCCTGCGTACGCTCCTACTCCAGCATCGTCTTGAAACCTCAGTGGACCAAGTAACATGCAACTACATCGACCCCAGGAAGATCTCTTCCTCCGCCTTCTCCTGCGTACGTTCCTACTCCAGCATCGTCTTGAAACCTCAGTGGACCAAGTAACATGCAACTACATCGACCCCAGGAAGATCTCTTCCTCCGCCTTCTCCTGCGTACGCTCCTACTCCAGCATCGTCTTGAAACCTCAGTAGACCAAGTAACATGCAACTACATCGACCCCAGGAAAATCTCTTCCTCCGCCTTCTCCTGCGTACGCTCCTACTCCAGCATCGTCTTGAAACCTCAGTGGACCAAGTAACATGCAACTACATCGACCCCAGGAAGATCTCTTCCTCCGCCTTCTCCTGCGTACGCTCCTACTCCAGCATCGTCTTGAAACCTCAGTGGACCAAGTAACATGCAACTACATCGACCCCAGGAAGATCTCTTCCTCCGCCTTCTCCTGCGTACGCTCCTACTCCAGCATCGTCTTGAAACCTCAGTGGACCAAGTAACGTGCAACTACATCGACCCCAGGAAGATCTCTTCCTCCGCCTTCTCCTGCGTACGCTCCTACTCCAGCATCGTCTTGAAACCTCAGTGGACCAAGTAACATGCAACTACATCGACCCCAGGAAGATCTCTTCCTCCGCCTTCTCCTGCGTACGTTCCTACTCCAGCATCGTCTTGAAACCTCAGTGGACCATGTAACAAGCGTCTTTTTACCACTAAAATTCCAGTAAAATGTAACTAAATCACCAGCTGTGTTGAAACCTCAGTGGATGAAGTCACATGCTTCTAACATtaacaacataacataacataacaagcATACCCCTTAGCACCTTCTCTTTaggcactcctgtagatctgaaaggTGTAAACAATATGGCTACATTTCCACACAGCCAATCAGAAGGCAAGATCACGTAATTACCATATTGTTTCAGCCAATTACAAAGGAAGAATTAAATGACGATGATCCTCTCAGATCGAGAGGAAATGCCTGGAAGTCCACGTGGAATTCAGCCTGTGTATTCTGTCTGTTATTCTAGTAAAAACCAAAAGAAACTGTCACTGGCCGTGTCCCGAAATCTGTCAAGTACGGGTTGTTACAGTATATCAAGAAAATGTCCCTAAATCAGCAGCCTCCGACGGTGTCTCAATATTACTGAGTGATGCGTACAACCTGCGACGCATGTTAATGTACTGTTAAGGTCTGTGGGAAACATTCTGCTAGGTAAACACACTGTATGTACCTTCCATTTCTCAGTGTTTTATTCATCTTTATTAAactggttgttgtttttttta

Function

symbol description
ecm2 Predicted to enable collagen V binding activity and heparin binding activity. Predicted to be involved in extracellular matrix organization and positive regulation of cell-substrate adhesion. Predicted to be active in extracellular matrix. Is expressed in apical ectodermal ridge pectoral fin bud; fin fold pectoral fin bud; median fin fold; pectoral fin; and pharyngeal arch. Orthologous to human ECM2 (extracellular matrix protein 2).

NR:

description
LOW QUALITY PROTEIN: extracellular matrix protein 2-like

GO: NA

KEGG:

id description
K08119 ECM2; extracellular matrix protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950973.1 True 3949 mRNA 0.52 12 93152226 93183983

Neighbor

gene id symbol gene type direction distance location
LOC110494838 ippk coding upstream 20589 93100141 ~ 93131637 (+)
LOC118940514 NA coding upstream 73418 93057698 ~ 93078808 (+)
LOC110504503 LOC106566236 coding upstream 837154 92282926 ~ 92317484 (+)
LOC118940166 NA coding upstream 905130 92246394 ~ 92247096 (+)
LOC118940512 NA coding upstream 1134026 92015537 ~ 92020588 (+)
LOC110494840 LOC106566248 coding downstream 42536 93226519 ~ 93242451 (+)
stab1 LOC106566251 coding downstream 110080 93294063 ~ 93442319 (+)
il10b il10b coding downstream 547986 93731969 ~ 93740530 (+)
acot8 acot8 coding downstream 598121 93782104 ~ 93796507 (+)
LOC110494855 LOC106592089 coding downstream 622059 93806042 ~ 93888837 (+)
G1506670 NA non-coding upstream 32528 93114748 ~ 93119698 (+)
G1506671 NA non-coding upstream 33117 93117180 ~ 93119109 (+)
G1506635 NA non-coding upstream 64502 93085780 ~ 93087724 (+)
G1506633 NA non-coding upstream 67344 93082346 ~ 93084882 (+)
G1506649 NA non-coding upstream 108054 93043641 ~ 93044172 (+)
G1506631 NA non-coding downstream 6214 93190197 ~ 93192400 (+)
G1506737 NA non-coding downstream 103895 93287878 ~ 93288773 (+)
G1506767 NA non-coding downstream 175143 93359126 ~ 93359368 (+)
G1506787 NA non-coding downstream 219566 93403549 ~ 93483164 (+)
G1506844 NA non-coding downstream 316217 93500200 ~ 93502030 (+)
G1506406 NA other upstream 285192 92866206 ~ 92867034 (+)
G1505924 LOC106566233 other upstream 702285 92447734 ~ 92467632 (+)
G1505894 NA other upstream 831449 92319545 ~ 92320777 (+)
G1503337 NA other upstream 2928567 90221545 ~ 90223659 (+)
G1506889 NA other downstream 392834 93576817 ~ 93577604 (+)
G1507612 NA other downstream 1166230 94350213 ~ 94351111 (+)
G1508290 NA other downstream 1489580 94673563 ~ 94673937 (+)
G1508614 NA other downstream 1897421 95081404 ~ 95082050 (+)
G1508618 NA other downstream 1906285 95090268 ~ 95090709 (+)

Expression


Co-expression Network