LOC110494840 (LOC106566248)


Basic Information

Item Value
gene id LOC110494840
gene name LOC106566248
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 93226519 ~ 93242451 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570164.2
GAGAGGTGTTTCCCCCTGTCTAAACTTGCAACCAAGGGGTTAAAGTCTGTTCCATAAACTCTCCTGTGCTTCAAGAATCTCCTTGTGCAGGCTTTAAATACTGATTTGACCAATCACATTTTACACACAGCCTGCCACTGAGAAAATAacttactgctactactactactaacccaTAGCTTGCACTGCCTCCTCACACTTTACCACAGCTTCCAGCTAGGTAACACACCACAGCACAGACACGATGGGAACTGTGAGAATGTTACTCTTCTCCGTTATACTGTCACCGTGGGTGCTCTCCTTGACTGGGAAACACTTTAACCAGGACTCAACGCTCCGACTGAAACAACAGGATGTATTGTTCGATAGAGAAGTTTATCTGGAAGCAAGGAGGTCTAAGAGAGAGGCAGCAGCGTTGTGGCTGGGAGAGGACTATGACTCCAGAATGGTCTTCCTGCCTGCTGATGAACCAGACGATGCCCCAGCCTCAGAGCTGCCCACatgcctgctgtgtgtgtgtctgaccggCTCTGTGTACTGTGAGGAAGTTGTTCCTGAGATGACTGCTGTGCCCACCCTGCCCAAGGAGACTGCCTACCTCTACGCCCGCTATAACAAGATCAACAAGATCACCAATAAAGACTTTGCAGAAATCGTGACTCTGAAGAGAATCGACCTGACGGGAAACCTGATCTCTGAGATCCAGGACGGAGCGTTCTCCAAGCTTACCCTATTGGAGGAACTCAATTTGGCTGAGAACCATCTGGTCAAGCTGCCCATGCTGCCCGGCAAGCTCACAACCTTCAACGCCAACCACAATCAGCTCAAAACCAAAGGGGTCAAGGCCAACGCCTTCAAGAAACTGAGGCAGCTGGTTAACCTGTTCCTCGGAGACAATGAGCTGGAGGCCGTGCCAGTGATCCCTGAGACCGTCCGCATTATTCACCTACAGAACAACAACATCACTGATGTCACCTCCGACACGTTCTGTAATGGCAACAACACGTACTACATCAGACCCAACCTGATAGAGGTGAGGTTGGATGGGAACCCAGTGCTGCTGTCCAAGTCCCCCGACAGCTTCACCTGCCTCAAGTCTCTCCCCGTCGGAAAATACCGCTAAACAAAAGACTCCCTGGGGAAAGGGATTTCGCTAACTTttccaaaattcccaggttttccagaaatcctagtTGGAGGAGTCCTGGAATCAGTAGGGAATAAACAGGGAATCCGGAATAGTCCAAACAGGATTTCTGTATAACTAGGGGATTTAGGAAAAGTTTTCCAACGTTAATGGACTTCCTGGTTATTAAATAACATTACAGTAGTAAAACAGATTCTACAGGGCTTTCAGCAAGACAGACACATACAACGCAATTCCCTATTCTACTTGACGAAGACAAGACCATCTGATAAGACTGGTCGTCTACACAATTACATTCCATTTCTGTCTGAACGTTTCTTCTGTAAAAAATTGTGCCCAGGTCTTTCAGAAGGCTAGTGGATTGGGACTGAAACGTTAGCGTGTCCCATTAGCAAGCTACGTCAGGCTTCCTCTCTGCGTGGGTTCTGATTTCATTTCCTTTACGTTTAGACTGGTCTTGAACATAAACTTGAACACATGAGCTAAATGGTCTGAAGCCTTTGTAAATACACCTTTTATTCTGCTTCTGCATAATGTATGAATTATGACTTCTTCAAAATGTTGAGTCAAGCTTTTGGCTTTCTGAATTCTGTGAATTACCTTCATGTAAACTGGTTCTTAAGTAGAAGTTGACAATACATGTATCTTTGAAATACGTAGCCTGTAGTAATGTGAACCTAATGTGTCTCAAAATCGTAAGCTTTGATATTGAAATGGTGGAATCAGACATGGTATGATCCTTTTCTAAAGTCCTTTTAGAAAAGGATCATTAGGAATTATTACCTGTGATTATTACCTGTGATTATTACCTGTGGTTATTACCTGTAGTTATTACCTGTGGTTATTACCTGTGGTTATTACCTGTGGTTATTACATGTGATTATTACATGCGATTATTACCTGTGATTATTACATGAGATTACTACATGTGATTATCACATGCGATTATTACCTGTGATTATTACATGAGATTACTACCTGTGGTTATTACATGTGATTACTACATGTGATTATTACATGCGATTATTACCTGTGATTATTACATGAGATTACTACATGTGATTATCACATGCGATTATTACCTGTGATTATTACATGAGATTACTACCTGTGATTATTACATGAGATTACTACCTGTGGTTATTACATGTGATTATCACATGCGATTATTACCTGTGATTATTACATGAGATTATTACATGTGATTATTACCTGTGATTATTACCTGTGATTATTACCCGTGGTTATTACATGCGATTATTACCTGTGATTATTACCTGTGATTATTACCTGTGGTTAATACCTGTGATTACTACCTGGGGTTAATACCTGCGATTATTACCTGTGATTATTACCTGTGATTATCACTTGTGATTTTCACCTGTGATTATTACCTGTGATTCTGACCTGTACACTAAAATCCCAGAAATTGTATTTGACCGTGGctgtgtttttatacattttaatacaattaaaatactttaaaaaaattaaaCCCTGCATGAACGTCAACCAAACAGAAACCCA

Function

NR:

description
mimecan-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570164.2 True 2674 mRNA 0.42 6 93226519 93242451

Neighbor

gene id symbol gene type direction distance location
LOC110511384 ecm2 coding upstream 42536 93152226 ~ 93183983 (+)
LOC110494838 ippk coding upstream 94882 93100141 ~ 93131637 (+)
LOC118940514 NA coding upstream 147711 93057698 ~ 93078808 (+)
LOC110504503 LOC106566236 coding upstream 911447 92282926 ~ 92317484 (+)
LOC118940166 NA coding upstream 979423 92246394 ~ 92247096 (+)
stab1 LOC106566251 coding downstream 51612 93294063 ~ 93442319 (+)
il10b il10b coding downstream 489518 93731969 ~ 93740530 (+)
acot8 acot8 coding downstream 539653 93782104 ~ 93796507 (+)
LOC110494855 LOC106592089 coding downstream 563591 93806042 ~ 93888837 (+)
LOC110494842 LOC106566274 coding downstream 731252 93973703 ~ 94252002 (+)
G1506631 NA non-coding upstream 34119 93190197 ~ 93192400 (+)
G1506670 NA non-coding upstream 106821 93114748 ~ 93119698 (+)
G1506671 NA non-coding upstream 107410 93117180 ~ 93119109 (+)
G1506635 NA non-coding upstream 138795 93085780 ~ 93087724 (+)
G1506633 NA non-coding upstream 141637 93082346 ~ 93084882 (+)
G1506737 NA non-coding downstream 45427 93287878 ~ 93288773 (+)
G1506767 NA non-coding downstream 116675 93359126 ~ 93359368 (+)
G1506787 NA non-coding downstream 161098 93403549 ~ 93483164 (+)
G1506844 NA non-coding downstream 257749 93500200 ~ 93502030 (+)
G1506857 LOC106566255 non-coding downstream 289248 93531699 ~ 93537542 (+)
G1506406 NA other upstream 359485 92866206 ~ 92867034 (+)
G1505924 LOC106566233 other upstream 776578 92447734 ~ 92467632 (+)
G1505894 NA other upstream 905742 92319545 ~ 92320777 (+)
G1503337 NA other upstream 3002860 90221545 ~ 90223659 (+)
G1506889 NA other downstream 334366 93576817 ~ 93577604 (+)
G1507612 NA other downstream 1107762 94350213 ~ 94351111 (+)
G1508290 NA other downstream 1431112 94673563 ~ 94673937 (+)
G1508614 NA other downstream 1838953 95081404 ~ 95082050 (+)
G1508618 NA other downstream 1847817 95090268 ~ 95090709 (+)

Expression


Co-expression Network