LOC110494848 (pdhb)


Basic Information

Item Value
gene id LOC110494848
gene name pdhb
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 93531690 ~ 93557343 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950980.1
ATCTCCTCAAGTAGTATCTCTGGACGGACAGACAGCTGCTCTGATTGGACTGGATCCTTCTCCAGGACAAGTCGCTCCTCCCACTCAGAGGACAGGTCAAAGATGGCGTCGTTGGGGTGTTTTCTTCGCACCGGGAAGAATGCCGTGTCGGTGGTCCTACGAAGGGAGTTCAGCAAGACACCTCCGGCTGCTGTGCAGGTGAATGTCCGAGATGCCCTCAACCAGGCCATGGACGAGGAActggagagggatgagagagtctTCCTTCTCGGGGAGGAGGTGGCTCAGTATGATGGAGCCTACAAGGTCAGCAGAGGGTTGTGGAAGAAATATGGAGACAAACGCATCATCGACACGCCAATCACAGAGATGGGATTTGCTGGCATTGCTGTTGGTGCTGCATTCGCCGGGTTGAGGCCAATCTGTGAGTTCATGACCTGGAATTTCTCCATGCAAGCCATCGACCAGGTGATCAACTCCGCTGCTAAGACCTACTACATGTCAGCCGGAGCCCAGCCTGTCCCCATTGTGTTCCGCGGCCCCAACGGCTCCTCTGCAGGCGTGGCAGCCCAACACTCCCAGTGCTTCGCTGCCTGGTACGGACACTGCCCCGGTCTCAAAGTAGTCAGCCCCTGGAACTCTGAGGACGCCAGAGGGCTCCTTAAAGCAGCTATCAGGGACGACAACCCTGTGGTGTTCCTGGAGAATGAGCTGATGTATGGTGTGCCTTTTGACCTGTCTGAGGAGGTTATGCAGAAAGACTTTGTCGTACCTATTGGAAAGGCCAAGGTGGAAAGACAAGGAACCCATATCACTCTAGTGTCACATTCCCGGTGTGTGGGTTTCTGTCTGGACGCAGCGACTGTCCTGGCTAAGGAGGGGGTTGAATGTGAGGTGGTTAACCTGCGCACCATAAGGCCCCTGGATGTGGACACCATTGAGGCCAGTGTGATGAAAACCGGCCATCTGGTCACAGTGGAGGGGGGCTGGCCCCAGTACGGAGTGGGGGCTGAGATCTGTGCCAGAGTCATGGAGGGCCCAGCCTTCAACTACCTGGATGCCCCTGCAGTCCGCGTGACCGGTGTCGACATCCCCATGCCCTACGCTAAGATCCTGGAGGACCACAGTGTACCTCAGATCAAAGACATCATCTTCTCAGTCAAGAAGGTCTTGAATATGTAAACATGCCAAATGTCTCCCTCCGACCCCTCCGTTACTTGCAGACCAACCTTATTTACCTTCTCAGTATTTACTTATACAATAGTAAGTACTGCAGGAAGtacgtatcccccccccccccccccaccctcccatgTCAATTTACCCCCCCACCCTCCCATGTTAATTTACCCCCCCACCCTCCCATGTCAATTTACCAGTAAATATACGCACATCGCTACGGGAACATAGTTCTTATTCACATCACGTGGCTACGGGAACATTGTCCTTATTCAGATACATTAATACCTACAATGACTTGCTCTTCTGTTTCCTGATTGGATGGGGGACAAAGAAGACGGTGATGTCAAGTAAAACCAAGTCATATAGTATGGATCTGTCATTGATCCATTGGTGAAAAGAAACTCTCTAAGAAGAAGAATACATTGTGGATTGTAAAGGAAGTGTATTTCTTATTGTAACATCATCAGACTATTTTATTGCTATAAATTGCTCTGTTACAGAAATAAAACTCCCATTTTATCAGTCTTGAAA

Function

symbol description
pdhb Enables pyruvate dehydrogenase activity. Acts upstream of or within pigmentation. Predicted to be part of mitochondrial pyruvate dehydrogenase complex. Is expressed in alar plate midbrain region; musculature system; optic tectum; optic vesicle; and pronephric duct. Human ortholog(s) of this gene implicated in pyruvate decarboxylase deficiency. Orthologous to human PDHB (pyruvate dehydrogenase E1 subunit beta).

NR:

description
PREDICTED: pyruvate dehydrogenase E1 component subunit beta, mitochondrial

GO:

id name namespace
GO:0006086 acetyl-CoA biosynthetic process from pyruvate biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity molecular_function

KEGG:

id description
K00162 PDHB, pdhB; pyruvate dehydrogenase E1 component beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950980.1 True 1713 mRNA 0.51 11 93531690 93557343

Neighbor

gene id symbol gene type direction distance location
LOC110493308 NA coding downstream 28425 93500200 ~ 93529938 (-)
LOC110494849 LOC106566252 coding downstream 36739 93477445 ~ 93494951 (-)
LOC118940168 NA coding downstream 449418 93080347 ~ 93082272 (-)
LOC110494837 LOC106566237 coding downstream 477515 93042606 ~ 93054175 (-)
LOC118940167 LOC106566237 coding downstream 493331 93034702 ~ 93038359 (-)
LOC118940515 NA coding upstream 10472 93567815 ~ 93572808 (-)
LOC110494844 slmap coding upstream 20840 93577689 ~ 93690695 (-)
LOC110494853 timp4 coding upstream 526526 94083869 ~ 94141578 (-)
LOC110494846 LOC106566275 coding upstream 699808 94257151 ~ 94321686 (-)
isy1 isy1 coding upstream 766378 94323721 ~ 94355073 (-)
G1507196 NA non-coding downstream 4590 93526168 ~ 93527100 (-)
G1507091 NA non-coding downstream 89375 93441541 ~ 93442315 (-)
G1507151 NA non-coding downstream 113613 93417088 ~ 93418077 (-)
G1507095 NA non-coding downstream 123007 93407749 ~ 93408683 (-)
G1507149 NA non-coding downstream 129436 93401457 ~ 93402254 (-)
G1507224 NA non-coding upstream 34077 93591420 ~ 93592860 (-)
G1507227 NA non-coding upstream 46068 93603411 ~ 93607824 (-)
G1507234 NA non-coding upstream 74635 93631978 ~ 93633111 (-)
G1507264 NA non-coding upstream 138215 93695558 ~ 93695836 (-)
G1507093 NA other downstream 124478 93406293 ~ 93407212 (-)
G1506957 NA other downstream 442982 93085682 ~ 93088708 (-)
G1506965 NA other downstream 487325 93043731 ~ 93044365 (-)
G1506543 NA other downstream 667716 92863102 ~ 92863974 (-)
G1507961 timp4 other upstream 606747 94164090 ~ 94198079 (-)
phf2 phf2 other upstream 1304283 94861445 ~ 94996238 (-)
G1508667 NA other upstream 1508302 95065645 ~ 95067363 (-)
G1508666 NA other upstream 1513639 95070982 ~ 95080563 (-)
LOC110493309 LOC106566266 other upstream 1604042 95160687 ~ 95164816 (-)

Expression


Co-expression Network