LOC110494846 (LOC106566275)


Basic Information

Item Value
gene id LOC110494846
gene name LOC106566275
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 94257151 ~ 94321686 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950996.1
GGAACCTTAACATCGGAACCTTATTTTAATTGATTCTGGGGGTTCATAGGCGGGTGTTTCGGTTTGCACTCAAACGTGACAACGATAACATAAATACTGTTGCGCCAATGTTATTGATGAACAAAAATGAGCACGAAGCAAGTCACCTGCAGGTATTTTCTCCATGGAGTCTGCCGAGAGGGGAATAGGTGCATGTTCTCTCATGACCTGACCACCAGTAAACCTTCAACCATTTGTAAGTTCtaccagagaggtgtgtgtgcctACGGAGACCGCTGCAGGTATGACCACATCAAGCcatctggtggtggtggtggaggaggagggagaggtgtgcCCATGGACCTCCCTAACAGAAACCCCATCACTGCTGGGGCCTTCATCCCCCCTGGGGTGCCTGGACCTCTCGCCCCCACTGCACCCCAAGCCAGGCATCAGGGGGGGAAGAAACCGCTGGTGCTGAGAGATCGAGccctggGGTGTGACAGTACAATGATGCCCTTCGGTGGGGGTGGCTCAGAGGCGGACTGTTGGACGGAGTACCATGACAACAGTGCCCATGCCAAACCTCCACACTCCTACCTAGATGCCATCAGGACCGGTCTGGAGTGTTCTGCCACGGCCGGCCCCTACCATGTCGCTGGCCCCCAGCCACAGCTCTGTCCCTACGCCGCTGCAGGACAGTGTAACTACGGAAACACCTGTCCCTATCTCCACGGTGATATGTGTGACATCTGCCGTCTGCAGGTGCTCCACCCACACAACCCTGAGCAGAGGAGAGCTCACGAGAAGATGTGTATGTTGGTGTTTGAGGCGGACATGGAGAAGGCGTTTGCAGCGCAGCACAGCCAGGACAAGGTGTGTTCTATCTGTATGGAGGTGGTTTATGAGAAAGCTGCTGCCTCAGAGAGACGCTTCGGGATCCTCTCTTCCTGCTGCCACACATACTGCCTCTCCTGCATCCGCCAGTGGCGCTGCGCCAAGCAGTTTGAGAACAAGATCATCAAGTCATGTCCAGAGTGCAGAGTGGTGTCTGAGTTTGTCATCCCCAGTGGTTTCTGGGTGGAGGACCAGGATGAGAAGAACAGACTGATAGAGGACTTCAAGTctggagtcagTAAGAAGGCGTGTAAGTACTTTGACCAGGGCCGGGGAACCTGTCCGTTTGGAGGGAAGTGTTTCTACATGCATGCTTACCCTGACGGAACACGGGCCGAGCCGGACAAACCCCGCAAGCAGCTGGGCTCTGAGGGGAACGTGAGGTTCCTGAACTCTGTCCGTCTGTGGGACTTCATCGAGGAGCGCGAGCAGCGCAGTGTTGCCCAGCCGCAGGAAGATGAGGTCAGCGAACTGAGAGAACTCTTCATGCAGATGTCTGGTccaggaggggaggagagcagtGCAGTGTCTGCCCAGCCCTGAGCCCTCAACCTGGGGCCCTAACTACCCGTTATCCAGGCCTAGCCCCAGCCCTCTGACCAACGGCTCATATCAAATTGCAAACATACATACGACACTGGACAATAAAATGTACTCACTAGTAAGCCTTTCATGTTGATGGTTTCaggctttttttaaatgatattttTACTCATGGTACATTTGTGTGGAAAATAACATAGTAAATCTGTACATAGAGCTGTAATGGTTCTGTTAGAGAAGCTGCTATATTTTCCAGATATGTTTTAGATAATTTATCTCTAGAAGGCTTTTTATATGAATGGGGTAGACATCTATAGAATGAACCATAAGGTCATAGTtttcaagtacagtgaaatgcctttacTTTCTTTTCATTGGATCTATAGAATCAGTTTGAGGTTGTATAGATAGATCAGACAGCCTCTCAGCCAGGCCACAACATGTGTTACAGTTAGATCACATATAGACATTTTTAAAAGAAACAAAACGTGGAATTCAAATCAATGCACCCAGGGGCTCTATTCAAGCTGGATTGCTGAAGTGATAGGAATTACTTTCATtttcgattgagccgacatattcAGTGTTCACTGTGAATGCGGTCTCTGCTGACGCAGTAACATTGGCTTTAAATTGAAATCCCGCTGTAACGCTGAACTTCCacaatacggattgaatagagccccaaGTCTGTTACATACTCGTTGTCCATGAAGGTATGGTGTGTTCATTTAGAGGCTTTTACATTTACGTTGCAACTAGTTCCTTCTATAGGAACTATTTAGTGTTGATGGATGCTCACATTATGAGGTTTAGTGACTTTATCCTTTTAATGGTATAAAATTATGATGTTGACCTTATTATCCTACATCATTCATCTATAGTAAGAGAATAATGCAGACCCTGGGTGATCTATCAGTCAGCCTGTAGAGGTGCAGAGGAATGAGCTCCTACCAGTAGTCGTCTCTATTATCTAATGTATTGAGTGAAGCTGCCTGGGGAGACTAAACTATAGTGTTTAGATAATATTATACTACCGTGTTTAATGTATATTCTATGGGAAATCAGAATCACTATGTTGGCTTTTATTTATCCAATTTCTTTTCAGTTTGAATGATTATTTCCAAAAAGAAGTTCAATAGCAGCAGTCCATTCATTCAATAAAGAAAATGTTTGACAGCA
>XM_036950997.1
GGAACCTTAACATCGGAACCTTATTTTAATTGATTCTGGGGGTTCATAGGCGGGTGTTTCGGTTTGCACTCAAACGTGACAACGATAACATAAATACTGTTGCGCCAATGTTATTGATGAACAAAAATGAGCACGAAGCAAGTCACCTGCAGGTATTTTCTCCATGGAGTCTGCCGAGAGGGGAATAGGTGCATGTTCTCTCATGACCTGACCACCAGTAAACCTTCAACCATTTGTAAGTTCtaccagagaggtgtgtgtgcctACGGAGACCGCTGCAGGTATGACCACATCAAGCcatctggtggtggtggtggaggaggagggagaggtgtgcCCATGGACCTCCCTAACAGAAACCCCATCACTGCTGGGGCCTTCATCCCCCCTGGGGTGCCTGGACCTCTCGCCCCCACTGCACCCCAAGCCAGGCATCAGGGGGGGAAGAAACCGCTGGTGCTGAGAGATCGAGccctggGGTGTGACAGTACAATGATGCCCTTCGGTGGGGGTGGCTCAGAGGCGGACTGTTGGACGGAGTACCATGACAACAGTGCCCATGCCAAACCTCCACACTCCTACCTAGATGCCATCAGGACCGGTCTGGAGTGTTCTGCCACGGCCGGCCCCTACCATGTCGCTGGCCCCCAGCCACAGCTCTGTCCCTACGCCGCTGCAGGACAGTGTAACTACGGAAACACCTGTCCCTATCTCCACGGTGATATGTGTGACATCTGCCGTCTGCAGGTGCTCCACCCACACAACCCTGAGCAGAGGAGAGCTCACGAGAAGATGTGTATGTTGGTGTTTGAGGCGGACATGGAGAAGGCGTTTGCAGCGCAGCACAGCCAGGACAAGGTGTGTTCTATCTGTATGGAGGTGGTTTATGAGAAAGCTGCTGCCTCAGAGAGACGCTTCGGGATCCTCTCTTCCTGCTGCCACACATACTGCCTCTCCTGCATCCGCCAGTGGCGCTGCGCCAAGCAGTTTGAGAACAAGTCATGTCCAGAGTGCAGAGTGGTGTCTGAGTTTGTCATCCCCAGTGGTTTCTGGGTGGAGGACCAGGATGAGAAGAACAGACTGATAGAGGACTTCAAGTctggagtcagTAAGAAGGCGTGTAAGTACTTTGACCAGGGCCGGGGAACCTGTCCGTTTGGAGGGAAGTGTTTCTACATGCATGCTTACCCTGACGGAACACGGGCCGAGCCGGACAAACCCCGCAAGCAGCTGGGCTCTGAGGGGAACGTGAGGTTCCTGAACTCTGTCCGTCTGTGGGACTTCATCGAGGAGCGCGAGCAGCGCAGTGTTGCCCAGCCGCAGGAAGATGAGGTCAGCGAACTGAGAGAACTCTTCATGCAGATGTCTGGTccaggaggggaggagagcagtGCAGTGTCTGCCCAGCCCTGAGCCCTCAACCTGGGGCCCTAACTACCCGTTATCCAGGCCTAGCCCCAGCCCTCTGACCAACGGCTCATATCAAATTGCAAACATACATACGACACTGGACAATAAAATGTACTCACTAGTAAGCCTTTCATGTTGATGGTTTCaggctttttttaaatgatattttTACTCATGGTACATTTGTGTGGAAAATAACATAGTAAATCTGTACATAGAGCTGTAATGGTTCTGTTAGAGAAGCTGCTATATTTTCCAGATATGTTTTAGATAATTTATCTCTAGAAGGCTTTTTATATGAATGGGGTAGACATCTATAGAATGAACCATAAGGTCATAGTtttcaagtacagtgaaatgcctttacTTTCTTTTCATTGGATCTATAGAATCAGTTTGAGGTTGTATAGATAGATCAGACAGCCTCTCAGCCAGGCCACAACATGTGTTACAGTTAGATCACATATAGACATTTTTAAAAGAAACAAAACGTGGAATTCAAATCAATGCACCCAGGGGCTCTATTCAAGCTGGATTGCTGAAGTGATAGGAATTACTTTCATtttcgattgagccgacatattcAGTGTTCACTGTGAATGCGGTCTCTGCTGACGCAGTAACATTGGCTTTAAATTGAAATCCCGCTGTAACGCTGAACTTCCacaatacggattgaatagagccccaaGTCTGTTACATACTCGTTGTCCATGAAGGTATGGTGTGTTCATTTAGAGGCTTTTACATTTACGTTGCAACTAGTTCCTTCTATAGGAACTATTTAGTGTTGATGGATGCTCACATTATGAGGTTTAGTGACTTTATCCTTTTAATGGTATAAAATTATGATGTTGACCTTATTATCCTACATCATTCATCTATAGTAAGAGAATAATGCAGACCCTGGGTGATCTATCAGTCAGCCTGTAGAGGTGCAGAGGAATGAGCTCCTACCAGTAGTCGTCTCTATTATCTAATGTATTGAGTGAAGCTGCCTGGGGAGACTAAACTATAGTGTTTAGATAATATTATACTACCGTGTTTAATGTATATTCTATGGGAAATCAGAATCACTATGTTGGCTTTTATTTATCCAATTTCTTTTCAGTTTGAATGATTATTTCCAAAAAGAAGTTCAATAGCAGCAGTCCATTCATTCAATAAAGAAAATGTTTGACAGCA
>XM_036950998.1
GGAACCTTAACATCGGAACCTTATTTTAATTGATTCTGGGGGTTCATAGGCGGGTGTTTCGGTTTGCACTCAAACGTGACAACGATAACATAAATACTGTTGCGCCAATGTTATTGATGAACAAAAATGAGCACGAAGCAAGTCACCTGCAGGTATTTTCTCCATGGAGTCTGCCGAGAGGGGAATAGGTGCATGTTCTCTCATGACCTGACCACCAGTAAACCTTCAACCATTTGTAAGTTCtaccagagaggtgtgtgtgcctACGGAGACCGCTGCAGGTATGACCACATCAAGCcatctggtggtggtggtggaggaggagggagaggtgtgcCCATGGACCTCCCTAACAGAAACCCCATCACTGCTGGGGCCTTCATCCCCCCTGGGGTGCCTGGACCTCTCGCCCCCACTGCACCCCAAGCCAGGCATCAGGGGGGGAAGAAACCGCTGGTGCTGAGAGATCGAGccctggGGTGTGACAGTACAATGATGCCCTTCGGTGGGGGTGGCTCAGAGGCGGACTGTTGGACGGAGTACCATGACAACAGTGCCCATGCCAAACCTCCACACTCCTACCTAGATGCCATCAGGACCGGTCTGGAGTGTTCTGCCACGGCCGGCCCCTACCATGTCGCTGGCCCCCAGCCACAGCTCTGTCCCTACGCCGCTGCAGGACAGTGTAACTACGGAAACACCTGTCCCTATCTCCACGGTGATATGTGTGACATCTGCCGTCTGCAGGTGCTCCACCCACACAACCCTGAGCAGAGGAGAGCTCACGAGAAGATGTGTATGTTGGTGTTTGAGGCGGACATGGAGAAGGCGTTTGCAGCGCAGCACAGCCAGGACAAGGTGTGTTCTATCTGTATGGAGGTGGTTTATGAGAAAGCTGCTGCCTCAGAGAGACGCTTCGGGATCCTCTCTTCCTGCTGCCACACATACTGCCTCTCCTGCATCCGCCAGTGGCGCTGCGCCAAGCAGTTTGAGAACAAGATCATCAAGTCATGTCCAGAGTGCAGAGTGGTGTCTGAGTTTGTCATCCCCAGTGGTTTCTGGGTGGAGGACCAGGATGAGAAGAACAGACTGATAGAGGACTTCAAGTctggagtcagTAAGAAGGCGTGTAAGTACTTTGACCAGGGCCGGGGAACCTGTCCGTTTGGAGGGAAGTGTTTCTACATGCATGCTTACCCTGACGGAACACGGGCCGAGCCGGACAAACCCCGCAAGCAGCTGGGCTCTGAGGGGAACGTGAGGaagtcatcaaaagagagcgcctggggaaaaGGAGTGGCACTGCAGGgagcactgcagggcctggattaacctttaCATcagcagaggaacagaggaggagaaggTTCCTGAACTCTGTCCGTCTGTGGGACTTCATCGAGGAGCGCGAGCAGCGCAGTGTTGCCCAGCCGCAGGAAGATGAGGTCAGCGAACTGAGAGAACTCTTCATGCAGATGTCTGGTccaggaggggaggagagcag

Function

NR:

description
probable E3 ubiquitin-protein ligase makorin-2

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15687 MKRN; E3 ubiquitin-protein ligase makorin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950996.1 False 2604 mRNA 0.47 9 94257151 94321686
XM_036950997.1 False 2595 mRNA 0.47 8 94257151 94321686
XM_036950998.1 True 1504 mRNA 0.55 10 94258355 94321686

Neighbor

gene id symbol gene type direction distance location
LOC110494853 timp4 coding downstream 115659 94083869 ~ 94141578 (-)
LOC110494844 slmap coding downstream 566456 93577689 ~ 93690695 (-)
LOC118940515 NA coding downstream 684343 93567815 ~ 93572808 (-)
LOC110494848 pdhb coding downstream 699808 93531690 ~ 93557343 (-)
LOC110493308 NA coding downstream 753886 93500200 ~ 93529938 (-)
isy1 isy1 coding upstream 2035 94323721 ~ 94355073 (-)
LOC110494858 LOC106566283 coding upstream 42081 94363767 ~ 94392932 (-)
acad9 acad9 coding upstream 162595 94484281 ~ 94519204 (-)
LOC118940516 NA coding upstream 535532 94851926 ~ 94861352 (-)
phf2 phf2 coding upstream 539759 94861445 ~ 94996238 (-)
G1508038 NA non-coding downstream 5167 94249697 ~ 94251984 (-)
G1508035 NA non-coding downstream 10650 94245096 ~ 94246501 (-)
G1507961 timp4 non-coding downstream 59072 94164090 ~ 94198079 (-)
G1508008 NA non-coding downstream 68502 94186284 ~ 94188649 (-)
G1507988 NA non-coding downstream 104474 94152377 ~ 94152677 (-)
G1508100 NA non-coding upstream 48928 94370614 ~ 94372203 (-)
G1508101 NA non-coding upstream 49853 94371539 ~ 94372397 (-)
G1508097 NA non-coding upstream 59083 94380769 ~ 94382280 (-)
G1508111 LOC106600457 non-coding upstream 74784 94396470 ~ 94396689 (-)
G1508113 NA non-coding upstream 76138 94397824 ~ 94398083 (-)
G1507093 NA other downstream 849939 93406293 ~ 93407212 (-)
G1506957 NA other downstream 1168443 93085682 ~ 93088708 (-)
G1506965 NA other downstream 1212786 93043731 ~ 93044365 (-)
G1508667 NA other upstream 743959 95065645 ~ 95067363 (-)
G1508666 NA other upstream 749296 95070982 ~ 95080563 (-)
LOC110493309 LOC106566266 other upstream 839699 95160687 ~ 95164816 (-)

Expression


Co-expression Network