isy1 (isy1)


Basic Information

Item Value
gene id isy1
gene name isy1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 94323721 ~ 94355073 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950999.1
GTGAATGGGGCTTTCTATTGCAGAAGCAGTTTTAGCCTATCTTCATACGGTACTGTCTTTGGTGCACCCGCTTTCAACTTGTGAAAAACATCTAGCAAACGTTTTGGAAGAGGTGTTCAAAGACTGAAGTAACTACTTTAGCTAGATAATCAACATATATGGCTCGTAATGCAGAGAAGGCCATGACGGCCTTGGCCCGGTTCAGAAATGCTCAGCTGGAGGAGGGCAAAGTCAGGGAGAGGAGACCGTTCCTGGCCTCAGAATGTACTGAGCTGCCTAAAGCAGAGAAGTGGAGACGACAGATTATCAGTGAGATCTCCAAGAAAGTTGCTCAGATTCAAAATGCTGGTCTGGGAGAGTTTAAGATCCGGGACCTGAACGATGAGATCAATAAGTTGCTGAGAGAGAAAGGTCACTGGGAGGTCAGGATCAAGGAGCTGGGAGGACCTGACTACGGGAGAGTGGGACCAAAGATGCTGGACCATGAAGGGAAGGAGGTCCCAGGAAACAGAGGATATAAATACTTTGGAGCAGCTAAAGACCTGCCTGGAGTCAGAGAGCTGTTTGAGAAAGAACCCATCCCTCCCCCCAGGAAGAGCAGAGCGGAGCTAATGAAGGACATCGATGCTGAGTACTACGGATACAGAGATGAGGATGATGGGGCGCTGGTCCCTCTGGAGCAAGAGTACGAAAAAGAAGtgatatTGAAGGCAGTGGAGAAATGGAAAACGGAGAGAGAAGCGCGTCttgcaggaggaagagaggaggtcgaggaagaggaggaacatATGTATGCTGTAAAGGAGGATGAGCATTCAGATGACGAGACTAGAGAacagatggaaggagaggatggaACTCTCACATCCTTTATCGCTCACGTTCCTGTGCCGTCTCAGAAAGAGATTGAGGAGGCGTTGGTGAGAAGGAAGAAGATGGAGCTCCTTCAGAAGTACGCCAGTGAGACCCTGATGGCCCAAAGTGAGGAGGCCAAGACACTactggggctgtagtggagagatggagatctAGGACTGAATAGGCtgtagtggagagagggaggagagatctATCTATAGGTCTAGGGCTGAAGGACTGTATTAATGTTGGGATGAGGTGTCATGGCCTGCTTTTCCCAGACTATATAACCAGCTCCTTCTTATTCTTAGTGCTAGTACTAAACTAATCAGAGATTTGGCTGTAGCAggaacagacctgggaccaggttaGTCATGTGAATGGGATAATGTCTTGTTTGGTCTGTTGGAGGTACAGAACCACATTGTGTTATATCATGATGTAATGTTACAAGCCTTGtaaataaataacttttttttttacaattttacaTTTTCCGAAGTAAACTCTATTTTCATCTGAATAAA

Function

symbol description
isy1 Predicted to be involved in generation of catalytic spliceosome for second transesterification step and mRNA 3'-splice site recognition. Predicted to be located in nucleus. Predicted to be part of Prp19 complex and spliceosomal complex. Orthologous to several human genes including ISY1-RAB43 (ISY1-RAB43 readthrough).

NR:

description
pre-mRNA-splicing factor ISY1 homolog

GO: NA

KEGG:

id description
K12870 ISY1; pre-mRNA-splicing factor ISY1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950999.1 True 1385 mRNA 0.47 10 94323721 94355073

Neighbor

gene id symbol gene type direction distance location
LOC110494846 LOC106566275 coding downstream 2035 94257151 ~ 94321686 (-)
LOC110494853 timp4 coding downstream 182229 94083869 ~ 94141578 (-)
LOC110494844 slmap coding downstream 633026 93577689 ~ 93690695 (-)
LOC118940515 NA coding downstream 750913 93567815 ~ 93572808 (-)
LOC110494848 pdhb coding downstream 766378 93531690 ~ 93557343 (-)
LOC110494858 LOC106566283 coding upstream 8694 94363767 ~ 94392932 (-)
acad9 acad9 coding upstream 129208 94484281 ~ 94519204 (-)
LOC118940516 NA coding upstream 502145 94851926 ~ 94861352 (-)
phf2 phf2 coding upstream 506372 94861445 ~ 94996238 (-)
cstf1 cstf1 coding upstream 673313 95028386 ~ 95047466 (-)
G1508038 NA non-coding downstream 71737 94249697 ~ 94251984 (-)
G1508035 NA non-coding downstream 77220 94245096 ~ 94246501 (-)
G1507961 timp4 non-coding downstream 125642 94164090 ~ 94198079 (-)
G1508008 NA non-coding downstream 135072 94186284 ~ 94188649 (-)
G1507988 NA non-coding downstream 171044 94152377 ~ 94152677 (-)
G1508100 NA non-coding upstream 15541 94370614 ~ 94372203 (-)
G1508101 NA non-coding upstream 16466 94371539 ~ 94372397 (-)
G1508097 NA non-coding upstream 25696 94380769 ~ 94382280 (-)
G1508111 LOC106600457 non-coding upstream 41397 94396470 ~ 94396689 (-)
G1508113 NA non-coding upstream 42751 94397824 ~ 94398083 (-)
LOC110493308 NA other downstream 793783 93500200 ~ 93529938 (-)
G1507093 NA other downstream 916509 93406293 ~ 93407212 (-)
G1506957 NA other downstream 1235013 93085682 ~ 93088708 (-)
G1506965 NA other downstream 1279356 93043731 ~ 93044365 (-)
G1508667 NA other upstream 710572 95065645 ~ 95067363 (-)
G1508666 NA other upstream 715909 95070982 ~ 95080563 (-)
LOC110493309 LOC106566266 other upstream 806312 95160687 ~ 95164816 (-)

Expression


Co-expression Network