LOC118940516


Basic Information

Item Value
gene id LOC118940516
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 94851926 ~ 94861352 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037114.1
aaccatcagactgacccactggctagggactactacagtaaaccatctgactgacccactggctagGGactactacagtaaaccatcagactgacccactggctagggactactactgtaaaccatcagactgaccaACCTGCTTTGGACTACTATggtaaaccatcagactgacccactggCTAGGGACTACTACAGTAAACCAAGAGACTGACCCACTGGCTAGGGACTCCTACTGTAAACCAAGAGACTGACCCACTGGCTAGGGACTCCTACTGTAAACCAAGAGACTGACCCACTGGCTAGGGAATACTACAGTAAACCATCAGATTGACCCACTGGCTAGGGACTACTACtgtaaaccatcagactgaccaACCTGCTAGGGACTACTATGGAAAACCCTCAGACTGACCCACTGGCTAGGGACTATGGgaaaccatcagactgacccacaGGCTCGGGTCTACTACggtaaaccatcagactgaccgataggctagggactactacagtaaaccatcagactgacccactggctagggactactactgtaaaccatcagactgaccaACCTGCTTTGGTCTACTACTGTAAACCATCAGACCGACCCACTGGCTAGGGACTACTACggtaaaccatcagactgacccactggctagggactactacggtaaaccatcagactgacccactggCTAGTGACTACAACGGTtaaccatcagactgacccactggctaggcactactacagtaaaccatcAGACTTACCCACTGGTTAGGAACTACTACAgcaaaccatcagactgacccactggCTAGCGACTGTTACGGTAAATCATCATATTGACCCACtggctaggactactacaggtaaccatcagactgacctactggctaggactactacaggtaACCATCAGACTGACCTACTGGCTAGGGACTACTACTGGAAACCATCAGACTGACCAACCTGCTTTGGACTACTTTGGCAAACCCTCAGACTGACCCACTGGCTAGGGCCTACTATGGCAAACCGTCAGACTGACCCACTGGCTAGGGACTTTGGCAAACCATCAGACTTACCCACTGGCTAGGGACTATGGCAAACCAGCAGACTGACCCACTGGCTAGGGTCTCCTACGGTAAACCAAGAGTCTGACCCACTGGCTAGGGAATACTACAGTAAACCAAGAGACTGACCCACTGGCTAGGTACTACTACAGTAAGCCATGAGACTGATTCACTGGCTAGGGACTACTACTGTAAACCAAGAGTCTGACCCACTGGCTAGGGACTAGTATGGAaaaaccatcagactgacccactggctaggactactacaggtaACCATCAGACTGACCTACTGGCTAGGGACTACTACTGGAAACCATCAGACTGACCAACCTGCTTTGGACTACTTTGGCAAACCCTCAGACTGACCCACTGGCTAGGGACTTTGGCAAACCATCAGACTTACCCACTGGCTAGGGACTAGTACGGAaaaaccatcagactgacccactggCTAGGGACTACTACAGTAAACCAAGAGTCTGATCCACTGGCTAGGGACTATTACggtaaaccatcagactgacccactggCTAGGGACTATTACggtaaaccatcagactgacccactggCTAGGGACTACTACGGTAAACCATCAGATTGACCCACTGGCTAGGGACTATTACggtaaaccatcagactgacccactggctaggactactacaggtaACCATCAGACTGACCTACTGGCTAGGGACTACTACTGGAAACCATCAGACTGACCAACCTGCTTTGGACTACTTTGGCAAACCCTCAGACTGACCCACTGGCTAGGGCCTACTATGGCAAACCGTCAGACTGACCCACTGGCTAGGGACTTTGGCAAACCATCAGACTTACCCACTGGCTAGGGACTATGGCAAACCAGCAGACTGACCCACTGGCTAGGGACTCCTACTGTAAACCCAGAGACTGACCCACTGGCTAGGGACTCCTACtgtaaaccatcagactgacccactggCTAGGGACTACTACTGTAAACCAAGAGACTGACCCACTGGCTAGAAactactacagtaaaccatcAGACCGACCCAATGGCTAGGGactactacagtaaaccatcagactgactCACTGGCTTGGGACAACTACtgtaaaccatcagactgacccactggCTAGGGACTTCTACTGTAAACCAAGAGACTGACCCACTGGCTGGGGAATACTACGataaaccatcagactgacccgctggctagggactactactgtaaaccatcagactgaccaACCTGCTAGGGACTACTATGGCAAACCCTCAGACTGACCCACTGGCTAGAGACTATGgcaaaccatcagactgacccactgTCTAGGGACTACTACTGTAAAGCATCAGACTGACCCACAGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTACTACtgtaaaccatcagactgacccacaggctagggactactacagtaaaccat
>TU1725273
ACAGGTTATTCATAGGGAATTCATTCCTGCTATTTGGATGCGGCTTATCATTACCTTGCAATGTTGTTGATGATTTTAGGAAATACATGTTTTCCTCTGTCCTCCTCAGACCAGACATAGCCTGAAATCCAGTCTGTTTGTTCCAACATTCCACTCCAAACATATTTGTCATGACAAGGAGTGGGATGTTAGCACAAACAATGTTGATTTCAGTCTAGACCCAGACCTTCACTAGAAACATTCACCTCCAcgctatttatttatttcctaAGCACTATCAGTTATGATATTTAATGTCCTAATATAATGTCATAGATAAGAAAGGAAAGCCAAAAAGGCACTTATGAAACAACTATTAAGCACAAAATATGAAGAGATTTTCAGAGTAATCTCAGAGGTCAAATATGATGATGGTTACAAACATATCAGCATCTTCTCACAATCTAGAATTAGTTCGATTTGAAGACTATTGTAAGTTAAATATTGTGATTATAGACTGTTGTCTTCCCTCAGATGGCGTAATTCTAATGCGACAAGCGCGTCCCGGAGATATCTGTTTAGCAAGTCGTGGAAGTCATCTCTGAAAACATAGTCTTTGCTCATCTGCCTAACACTATTGGCAAGTGGCTACtaaccatcagactgacccactggctagggactactactgtaaaccatcagactgacccactggctagggactactatagtaaaccatcagactgacccactggctagggactactacagtaaaccatcagactgacccactggctagggactactacagtaaaccatcagactgacccactggCTAGTAACTACTACTGgaaaccatcagactgacccactgACTAGGGACTCCTACTGTAAACCCAGAGACTGACCCACTGGCTAGGGACTCCTACTGTAAACCAAGAGACTGACCCACTGGCTAGGGACTCCTACtgtaaaccatcagactgacccactggctagggactactactgtaaaccatcagactgacccactggCTAGGGACTACTACGGTAAGccatcagactgacccactggCTAGGGACTACTACAGTAAACCAAGAGACTGACCCACTGGCTAGGGACTCCTACTGTAAACCAAGAGACTGACCCACTGGCTAGGGACTCCTACtgtaaaccatcagactgacccactggctacggactactacagtaaaccatcagactgacccaaTGGCTACGGactactacagtaaaccatcagaccgacccactggctagggactactactgtcaaccatcagactgacccactggctagggactactacagtaaaccatctgactgacccactggctaggtactactacagtaaaccatcagactgacccactggCTAGGGACTACTACAGTAAACCAAGAGACTGACCCACTGGCTAGAATCTACTACtgtaaaccatcagactgacccactggctagggactactacagtaaaccatctgactgacccactggctaggtactactacagtaaaccatcagactgacccactggCTAGGGACTACTACGGTAAACCATCTGACTGACCCACTGGCTAGGTACTACTACAGTAAACCAAGAGACTGACCCACTGGCTAGGTactactacagtaaaccatcAGACCGACCCAATGGCTAGGGactactacagtaaaccatcagactgacccactggctagggactactactgtaaaccatcagactgaccaACCTGCTTTGGACTACTATggtaaaccatcagactgacccactggCAAACCAGCAGACTGACCCACTGGCTAGGGTCTCCTACGGTAAACCAAGAGTCTGACCCACTGGCTAGGGAATACTACAGTAAACCAAGAGACTGACCCACTGGCTAGGTACTACTACAGTAAGCCATGAGACTGATTCACTGGCTAGGGACTACTACTGTAAACCAAGAGTCTGACCCACTGGCTAGGGACTAGTATGGAaaaaccatcagactgacccactggctaggactactacaggtaACCATCAGACTGACCTACTGGCTAGGGACTACTACTGGAAACCATCAGACTGACCAACCTGCTTTGGACTACTTTGGCAAACCCTCAGACTGACCCACTGGCTAGGGACTTTGGCAAACCATCAGACTTACCCACTGGCTAGGGACTAGTACGGAaaaaccatcagactgacccactggCTAGGGACTACTACAGTAAACCAAGAGTCTGATCCACTGGCTAGGGACTATTACggtaaaccatcagactgacccactggCTAGGGACTATTACggtaaaccatcagactgacccactggCTAGGGACTACTACGGTAAACCATCAGATTGACCCACTGGCTAGGGACTATTACggtaaaccatcagactgacccactggctaggactactacaggtaACCATCAGACTGACCTACTGGCTAGGGACTACTACTGGAAACCATCAGACTGACCAACCTGCTTTGGACTACTTTGGCAAACCCTCAGACTGACCCACTGGCTAGGGCCTACTATGGCAAACCGTCAGACTGACCCACTGGCTAGGGACTTTGGCAAACCATCAGACTTACCCACTGGCTAGGGACTATGGCAAACCAGCAGACTGACCCACTGGCTAGGGACTCCTACTGTAAACCCAGAGACTGACCCACTGGCTAGGGACTCCTACtgtaaaccatcagactgacccactggCTAGGGACTACTACTGTAAACCAAGAGACTGACCCACTGGCTAGAAactactacagtaaaccatcAGACCGACCCAATGGCTAGGGactactacagtaaaccatcagactgactCACTGGCTTGGGACAACTACtgtaaaccatcagactgacccactggCTAGGGACTTCTACTGTAAACCAAGAGACTGACCCACTGGCTGGGGAATACTACGataaaccatcagactgacccgctggctagggactactactgtaaaccatcagactgaccaACCTGCTAGGGACTACTATGGCAAACCCTCAGACTGACCCACTGGCTAGAGACTATGgcaaaccatcagactgacccactgTCTAGGGACTACTACTGTAAAGCATCAGACTGACCCACAGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTACTACtgtaaaccatcagactgacccacaggctagggactactacagtaaaccatcagactgacctactggctagggactactactgtaaaccatcagactgacccacaggctagggactactacagtaaaccatcagactgacctACTGGCTAGGGACTGCTACtgtaaaccatcagactgacccacaggctagggactactacagtaaaccatcagactgacctactggctagggactactactgtaaaccatcagactgacccactgtctagggactactacagtaaaccatcagactgacccactggctagggactactacagtaaaccatcagactgacccactggctagggactactacagtaaaccatcagaccgacccactggctagggactactactgtaaaccatcagactgacccactgtctagggactactacagtaaaccatcagactgaccaactggctagggactactacagtaaaccatcagactgacccacaggctagggactactacagtaaaccatcagactgacccactggctagggactactacagtaaaccatcagactgacccacaggctagggactactacagtaaaccatctgactgacccactggctagggactactacagtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccactggCTAGGGACTACTACTGTAAAGCATCAGACTGACCCACAGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTGCTACtgtaaaccatcagactgacccacaggctagggactactacagtaaaccatcagaccgacccactggctagggactactacagtaaaccatcAGACCGACCCACTGGCTATGGactactacagtaaaccatcagaccgacccactggctagggactactactgtaaaccatcagactgacccactgtctagggactactacagtaaaccatcagactgaccaactggctagggactactacagtaaaccatcagactgacccacaggctagggactactacagtaaaccatcagactgacccactggctagggactactacagtaaaccatcagactgacccacaggctagggactactacagtaaaccatctgactgacccactggctagggactactacagtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccactggCTAGGGACTACTACTGTAAAGCATCAGACTGACCCACAGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTACTACtgtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccactggCTAGGGACTACTACTGTAAAGCATCAGACTGACCCACAGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTCCTACTGTAAACCCAGAGACTGACCCACTGGCTAGGGACTCCTACtgtaaaccatcagactgacccactggCTAGGGACTACTACTGTAAACCAAGAGACTGACCCACTGGCTAGAAactactacagtaaaccatcAGACCGACCCAATGGCTAGGGactactacagtaaaccatcagactgactCACTGGCTTGGGACAACTACtgtaaaccatcagactgacccactggCTAGGGACTTCTACTGTAAACCAAGAGACTGACCCACTGGCTGGGGAATACTACGataaaccatcagactgacccgctggctagggactactactgtaaaccatcagactgaccaACCTGCTAGGGACTACTATGGCAAACCCTCAGACTGACCCACTGGCTAGGGACTATGgcaaaccatcagactgacccactgTCTAGGGACTACTACTGTAAAGCATCAGACTGACCCACAGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTACTACtgtaaaccatcagactgacccacaggctagggactactacagtaaaccatcagactgacctactggctagggactactactgtaaaccatcagactgacccacaggctagggactactacagtaaaccatcagactgacctACTGGCTAGGGACTGCTACtgtaaaccatcagactgacccacaggctagggactactacagtaaaccatcagactgacctactggctagggactactactgtaaaccatcagactgacccactgtctagggactactacagtaaaccatcagactgacccactggctagggactactacagtaaaccatcagactgacccactggctagggactactacagtaaaccatcagaccgacccactggctagggactactactgtaaaccatcagactgacccactgtctagggactactacagtaaaccatcagactgaccaactggctagggactactacagtaaaccatcagactgacccacaggctagggactactacagtaaaccatcagactgacccactggctagggactactacagtaaaccatcagactgacccacaggctagggactactacagtaaaccatctgactgacccactggctagggactactacagtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccactggCTAGGGACTACTACTGTAAAGCATCAGACTGACCCACAGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTGCTACtgtaaaccatcagactgacccacaggctagggactactacagtaaaccatcagaccgacccactggctagggactactacagtaaaccatcAGACCGACCCACTGGCTATGGactactacagtaaaccatcagaccgacccactggctagggactactactgtaaaccatcagactgacccactgtctagggactactacagtaaaccatcagactgaccaactggctagggactactacagtaaaccatcagactgacccacaggctagggactactacagtaaaccatcagactgacccactggctagggactactacagtaaaccatcagactgacccacaggctagggactactacagtaaaccatctgactgacccactggctagggactactacagtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccactggCTAGGGACTACTACTGTAAAGCATCAGACTGACCCACAGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTACTACtgtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacctACTGGCTAGGGACTGCTACtgtaaaccatcagactgacccacaggctagggactactacagtaaaccatcagaccgacccactggctagggactactacagtaaaccatcagaccgacccactggctagggactactacagtaaaccatcAGACCGACCCACTGTCTAGGGactactacagtaaaccatcagactgacccactggctagggactactacagtaaaccatcagactgacccactggctagggactactacagtaaaccatcagaccgacccactggctagggactactactgtaaaccatcagactgacccactgtctagggactactacagtaaaccatcagactgacccactggctagggactactacagtaaaccatcagactgacccacaggctagggactactacagtaaaccatcagactgacccactggctagggactactacagtaaaccatcagactgacccacaggctagggactactacagtaaaccatctgactgacccactggctagggactactacagtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccactggCTAGGGACTACTACTGTAAAGCATCAGACTGACCCACAGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTACTACtgtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccactggctagggactactactgtaaaccatcagactgacccactggctagggactactacagtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccacaGGCTAGGGACTGCTacagtaaaccatcagactgacccaaaggctagggactactacagtaaaccatcagactgacccactggCTAGGGACTTCTACTTCTACTCTACCCATAGGGCGACggacaattggctcagcgtcttTAGGGTTTGACtagggtagaccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataaagtttaaatttaaacaatttaataaatacaaattcatatatatataatgaTTGGAGATCGGCTTAGCTAGcagtcaagctagctagctaattttcaTGCGCATTTTAAATGTAATGATACGGATTCTAAAACGACAGTAGTCCTTAGCTACACAGTACCATtcaaagattggacacacctactcattcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037114.1 False 2543 mRNA 0.50 2 94857218 94860080
TU1725273 True 8502 lncRNA 0.49 2 94851926 94861352

Neighbor

gene id symbol gene type direction distance location
acad9 acad9 coding downstream 338014 94484281 ~ 94519204 (-)
LOC110494858 LOC106566283 coding downstream 464286 94363767 ~ 94392932 (-)
isy1 isy1 coding downstream 502145 94323721 ~ 94355073 (-)
LOC110494846 LOC106566275 coding downstream 535532 94257151 ~ 94321686 (-)
LOC110494853 timp4 coding downstream 715726 94083869 ~ 94141578 (-)
phf2 phf2 coding upstream 1365 94861445 ~ 94996238 (-)
cstf1 cstf1 coding upstream 168306 95028386 ~ 95047466 (-)
LOC110493309 LOC106566266 coding upstream 300607 95160687 ~ 95164816 (-)
G1508522 NA non-coding downstream 6636 94848713 ~ 94850582 (-)
G1508516 NA non-coding downstream 14382 94842619 ~ 94842836 (-)
G1508514 NA non-coding downstream 17952 94839047 ~ 94839266 (-)
G1508411 NA non-coding downstream 24531 94832471 ~ 94832687 (-)
G1508407 NA non-coding downstream 31337 94825468 ~ 94825881 (-)
G1508553 NA non-coding upstream 102781 94962861 ~ 94963489 (-)
G1508569 NA non-coding upstream 140287 95000367 ~ 95001506 (-)
G1508571 NA non-coding upstream 142103 95002183 ~ 95003862 (-)
G1508573 NA non-coding upstream 142932 95003012 ~ 95005198 (-)
G1508574 NA non-coding upstream 143058 95003138 ~ 95004331 (-)
G1507961 timp4 other downstream 659139 94164090 ~ 94198079 (-)
LOC110493308 NA other downstream 1327280 93500200 ~ 93529938 (-)
G1507093 NA other downstream 1450006 93406293 ~ 93407212 (-)
G1506957 NA other downstream 1768510 93085682 ~ 93088708 (-)
G1506965 NA other downstream 1812853 93043731 ~ 93044365 (-)
G1508667 NA other upstream 205565 95065645 ~ 95067363 (-)
G1508666 NA other upstream 210902 95070982 ~ 95080563 (-)

Expression


Co-expression Network