phf2 (phf2)


Basic Information

Item Value
gene id phf2
gene name phf2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 94861445 ~ 94996238 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951005.1
TTTGATCAGGTAAAGAATCGGTAAATTGTTCGATTCCGGTTGCTCGATTTCTACCAAGCTCGAGCTTGTCGGTTTGAGAGGTCCCGGGATGCCCGCTGAAACGGTTGCTCCGTTAATGACATTCATTCATCTGATGCGAGCCATCGAGGACGAACGCTGACGTAACAGATATTACAATGCAACGAGGATACATTTTATGTTGGTTTATGAGTGGCTGGATACTACAGGCACCAGGGGGCAGGAAAACAATGATGCACTTCAGGAACATTATCGACCTCTGTGCTAAATCAGGACGATAACCAACTTAATGCAAGATCAGTGGATGATGGACTTGTGGATGTAATTTAATGTCCAGCGGAACTGGCTTGCTTCGGCTTGTGGAAGATCTTCATATTGCATTTTGTTGCAGTAGAGTTGCTGCtgccccgtctctctccctcctatccgACGTTGTTGTCAATGATCTAACATGGCGACTGTACCAGTATATTGCATCTGCAGATTACCGTACGACGTTACCCAGTTTATGATCGAATGTGACGCATGCAAGGACTGGTTTCACGGAAGCTGTGTTGGTGTGGATGAAGATGAGGCTCCAGACATTGACATCTACCACTGTCCCAACTGTGAGAAAACAGACGGAAAATCCACCaTGAAAAACAAGAAAAGGAATAAACACGACACGGGACAGAGTGGAGACATCCGAGCTGTTCAGAACGGCAGTCAGGTGTTCATCAAGGAGCTACGCAGTCGCACCTTCCCCAGCTCTGAGGACATTGTGGTGAAGCTGAACGGCAGTCAGCTGACGATGGACTACCTGGAAGAGGTTGGTTTTAACGAGCCGATCCTGGTTCTGAAGAAGGACGGTCTGGGGATGTCCATGCCCGCTCCTACCTTCTACATCAATGATGTGGAGAACCATGTTGGTCCAGAAGTGGGTGTGGATGTGATAGATGTGACCAAGCAGACTGACAGTAAGATGAAGCTCAAGGACTTTGTAGATTACTACTACAGCACCAACAGgaagaaagtgttaaacattaTCAACCTGGAGTTCTCTGACAAAAGAATGGACAGTATAGTGGAGAGCCCTCAGATTGTTCGGAGGTTGTCGTGGGTAGAGAACTACTGGCCAGACGATGCTCTCCTGGGGAAACCTAAAGTCACTAAGTACTGTCTGATCGGTGTTAAAGACAGCTACACTGACTTCCACATCGAGTGTGGAGGGGCCTCCGTATGGTACCACGTACTCAAGgGAGAGAAGATCTTCTTCCTGATCAAGCCCACGTCAGCTAACCTATCGTTGTACGAGCGCTGGAGGTCCTCAGCCAATCACACAGAGATGTTCTTCGctgaccaggtggacaagtgttACAAGTGTACTCTGAAGCAGGGACAGACCCTATTCATACCATCAGGTTGGATCAACGCAGTTCTGACTCCAGTGGACACTCTGGCCTTTTCTGGACACTTTGTCCACAACCTGAGTGTTGAGATGCAGATGAGAGCATATGAGGTGGAGAAGCGTCTGAAGGTCAACTGTCTGACTCCGTTCCCCAACTTTGAGACGGCCTGCTGGTACGTGGGACGCCACCTGCTGGAGAGGTTCAAAGGTTTACACAAGTCCAACAAGCAACCAGCTGCCTACCTGGTCCACGGAGCTAAGATCATCAACGGAGCTTTTAgagcttggaccaagaaacagGCTCTGTTAGAACACGAGGATGAGCTTCCAGAGAACATGAAGCCCACTCAGCTCATCAAGGACCTGGCCAAGGAGATCAGGATCTCAGAGAATGCGGCTAAAGCCATTAAGAGTCCAGTGGAGGAACCCCCTGCTGCCCCATCAGAGCCTGAGGACCCTGCTTCCCCCTCCAgcgtcccctctccctcccctcccctccgggAAAAACCAGCTAGGAAGAAGGCCTCCAAGCCACCCAAGCCGCCCAAGATGCCCAAGGCCCCCAAACCTCCCAAGGTCCCCaaagtgaaggagggagggaacaagaaaggaaagaaagagaaggaagtccctgctcctcctcctcctcctccatcgaAGCCCTCCAGCCTGGCAGCTCTGGAGTCTCACGCCAAGGACATCCTCAGCAAGATGGACCAACCCAAGAAGGGCAAGATGGGGGGCAAGGTGGCTAACAACATCCTGAGTATGTCGGGGACCTGTAAGCAGAACGATTTGGAGAAGATTGAGATCCGAGAACAGAACAAGAAACAGGCGGAGGCCAAGTGGAAATATAAGAACAGTAAACCAGATTCCTTATTGAAGATGGAAACTGAAGTGCACAAGTTTGAGAGAACGCCACTGTCGGGCAACAAAGACAAGTTTGCCTTTTCAATGACACACAAGAAGTTACTAGGttctaaGCTGAAGCCCCAGACTAACTCCAGTGTGTTCAGCTCGTTACAAAACCTAAAAGAGGACAAGGCCAAGCCGGTGAGAGACGAGTATGAGTATGTGTCAGACGAAGGAGAGCTGAAGATTGATGAGTTCCCCATcaggaggaaaaagagagactTATCCTTCCTGTCAAACATCAAAGAAGCAATCCAGCCATCCAAGAAGCCAAAGCTTATCCCCTCTGATGTCAAGAAGACTGACTCATCAGATGAAGAGTCGCTCCACATCGACACAGAAGTCAAGCCAGAGGTCAAGCGGGAGTTGAAAGGTCGTAACTTGAAGGTAAAGAAGAAGGCGGGAAGCACGGCAGGCATCCTGGACCTACTACAGGCCAGCAAAGCAGTGGGCGGCATCGACTACAGCGTCAACAGTCAGCCACCTGCATCTCCCAGCACACAGGAGGCCATTCAGGGGATGTTGTCTATGGCCAACCTGTCCTCCGGGGCTACCGCTGGGGCCACAGCCATCTCCTCCGACACCCCTGGGGCCTGGGGCTGTGACCGACCCGGCAGAAACCACTCCAACACCACCACCGCTGGACGGAAGGGAGGAGCAGCAAGCGGAGCGGGAGGAGGAGTAAGTAAGCGGCCAGCCAAACGACCCCTCAAAAAGACGAAGAAGAGCAGCAGCATCGACAGTGCCGAGTTCGATGATGATCAGGATCACATGGACGCCTGCTTCAAGGACTCAGATTATGTTTACCCTTCTCTGGAGTCTGAAGAGGATAACCCTGTCTTCAAATCCAGATCCAAGAAGAGGAAAGGTTCAGACACTCCATACAGCCCCACAGcaCGTGTCGGTCCCTCTGTGCTTCGTCAGGCGAGGCCGGCCAGAGAAGGAGCAAGAGTGGCGTCCATAGAGACAGGACTGGCGGCTGCTGCAGCCAAACTCTCTCACCAGGAGGAACAGCAGAAGACCAAGAAAAAGAAGAAAAGCACCAAAAAGAAGCCCCCTGCTGCcgtgagggaggaggaagaggaggagccagTGAGGAAGCTGAGCAGGTACAGCAGCTCTCCAGAACCAGGCGTGGGCCAGGACACTGAGCCGGGGCAGACCAACCACGAGTACTCCTCTGGGGCAGGAGGGAGTCAGGCTGGAGGGCTCCAGCCCATGGCCCCCGGAGTCTTCCTCACACAGAGACGACCCTCCACATCTTCATTGTCTcagaacaacaacacagccaaagGGGAgcgaggagcaggaggaggagcaggaggagaagcagcaggaggaggaggagcatcagcaggagCGAAGCGGCTAAAGAAAGGCATGGCGACGGCTaaacagagactgggaaagaTCCTCAAGATCCAACGCAATGGGAAACTCCTCCTTTAACAGGAAGTGACTCACTGAGAACTGCCATTGGTTCCTGATGCAGTACTATTGGCCAATGAACTGATCGCTTCTCCAACTCCTCTCTTCTGATAGGTCCAGGGCCAACAGAGACAGACTGCTTTATAACTTTCAGATATTAAAGTGTACAGAATACCTGCTAgaaatattttttaaagaaaaatgtGTGTCATTTTACTACAGTCAGTTTATCAGGGGGTCACTACACTAGAGATAAATTAGGGCTGCtgtccaaatggcactctattaccGTTATAATGCACTGgtcacccatagggctctggtcaaaagtagtgcactatattgggaatagggtgccatttgggaagacaGCCTAGAAATACATTGCAGTCATTCCATTCTAGGGTTGGGTGGGGTA
>TU1725251
CAGTGTTGAGCTGTGGAAGAAGACAGTGTTGAGCTGTGGAAGAAGACAGTGTTGAGCTGTGGAAGAAGACAGTGTTGAGCTGGGGAAGAAGACAGTGAGGCGCTGTGGAAGAAGACAGTGTTGAGCTGTGGAAGAAGACAGTGTTGAGATGTGGAAGAAGGCAGTGTTGAGATGTGGAAGAAGACAGTGTTGAGCTGGGGAAGAAGACAGTGAGGCGCTGTGGAAGAAGACAGTGTTGAGCTGTGGAAGAAGACAGTGTTGAGATGTGGAAGAAGGCAGTGTTGAGATGTGGAAGAAGACAGTGTTGAGCTGGGGAAGAAGACAGTGAGGAGCTGTGGAAGAAGGCAGTGTTGAGCTGTGGAAGAAGACAGTGTTGAGCTGGGGAAGAAGACAGTGAGGAGCTGTGGAAGAAGACAGTGTTGAGCTGGGGAAGAAGACAGTGAGGAGCTGTGGAAGAAGACAGTGTTGAGCTGTGGATCATGAGGAGCTGTGGAAGACGACAGTGTTGAGCTGTGGAAGACGACAGTGTTGAGCTGGGGAAGAAGACAGTGTTGAGCTGTGGAAGAAGACAGTGAGGAGCTGTGGAAGAAGACAGTGTTGATCTGTGGAAGAAGACAGTGTTGAGCTGTGGAAGAAGACAGCGTTGAGCTGTGGAAGAAGACAGTGTTGAGCTGGGGAAGAAGACAGTGAGGAGCTGTGGAAGAAGACAGTGTTAAGCTGGGGAAGAAGACAGTGAGGAGCTGTGGAAGAAGACAGTGTTGAGCTGTGGATCATGAGGAGCTGTGGAAGACGACAGTGTTGAGCTGTGGAAGAAGACAGTGAGGAGCTGTGGAAGAAGACAGTGTTGAGCTGGGGAAGAAGACAGTGTTGAGCTGTGGAAGAAGACAGTGTTGAGATGTGGAAGAAGACAGTGAGGAGCTGTGGAAGAAGACAGTGAGGAGCTGTGGAAGAAGACAGTGAGGAGCTGTGGAAGAAGACAGTGAGGAGCTGTGGAAGAAGACAGTGTTGAGCTGGGGAAGAAGACAGTGAGGAGCTGTGGAAGAAGTCAGTGTTAAGCTGGGGAAGAAGACAGTGAGGAGCTGTGGAAGAAGACAGTGGTGAGCTGTGGATCATGAGGAGCTGTGGAAGACGACAGTGAGGAGCTGTGGAAGAAGACAGTGAGGAGCTGGGGAAGAAGACAGTGAGGAGCTGTGGAAGAAGACAGTGAGGAGCTGTGGATCATGAGGAGCTGTGGAAGAAGACAGTGTTGAGATGTGGAAGAAGACAGTGAGGAGCTGTGGAAGAAGACAGTGTTGAGCTGTGGAAGAAGACAGTGTTGAGCTGTGGATCATGAGGAGCTGTGGAAGAAGACAGTGTTGAGCTGTGGAAGAAGACAGTGTTGAGCTGTGGAAGAAGACACTGTTGAGCTGTGGAAGAAGACCGTGTTGAGCTGTGGATCATATATGATCAGGGATGGAACTTCAGGATTTGTTTACTAGCCCGGGTTGAAATTCTAGGCCATGCGATATTTGAAAAGACAAAATGAATCTCGCCGGCGGGCTAGTTCGTTTACCCTTCTCTGGAGTCTGAAGAGGATAACCCTGTCTTCAAATCCAGATCCAAGAAGAGGAAAGGTTCAGACACTCCATACAGCCCCACAGcaCGTGTCGGTCCCTCTGTGCTTCGTCAGGCGAGGCCGGCCAGAGAAGGAGCAAGAGTGGCGTCCATAGAGACAGGACTGGCGGCTGCTGCAGCCAAACTCTCTCACCAGGAGGAACAGCAGAAGACCAAGAAAAAGAAGAAAAGCACCAAAAAGAAGCCCCCTGCTGCcgtgagggaggaggaagaggaggagccagTGAGGAAGCTGAGCAGGTACAGCAGCTCTCCAGAACCAGGCGTGGGCCAGGACACTGAGCCGGGGCAGACCAACCACGAGTACTCCTCTGGGGCAGGAGGGAGTCAGGCTGGAGGGCTCCAGCCCATGGCCCCCGGAGTCTTCCTCACACAGAGACGACCCTCCACATCTTCATTGTCTcagaacaacaacacagccaaagGGGAgcgaggagcaggaggagcagcagcatcaggaggaggaggagcagcaggtgcaggaggagaaggagcagcaggaggaggaggagcatcagcagcaggaggagcagcaTCAGGAGGAGCAGCAGCAAAGGGTGAAGCGAAGCGGCTAAAGAAAGGCATGGCGACGGCTaaacagagactgggaaagaTCCTCAAGATCCAACGCAATGGGAAACTCCTCCTTTAACAGGAAGTGACTCACTGAGAACTGCCATTGGTTCCTGATGCAGTACTATTGGCCAATGAACTGATCGCTTCTCCAACTCCTCTCTTCTGATAGGTCCAGGGCCAACAGAGACAGACTGCTTTATAACTTTCAGATATTAAAGTGTACAGAATACCTGCTAgaaatattttttaaagaaaaatgtGTGTCATTTTACTACAGTCAGTTTATCAGGGG

Function

symbol description
phf2 Predicted to enable several functions, including histone demethylase activity (H3-K9 specific); transcription coactivator activity; and transition metal ion binding activity. Predicted to be involved in negative regulation of ribosomal DNA heterochromatin assembly; protein demethylation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromatin organization. Predicted to be located in kinetochore and nucleolus. Orthologous to human PHF2 (PHD finger protein 2).

NR:

description
lysine-specific demethylase phf2-like

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951005.1 False 4163 mRNA 0.51 22 94861445 94996238
TU1725251 True 2482 TUCP 0.51 7 94861626 94868043

Neighbor

gene id symbol gene type direction distance location
LOC118940516 NA coding downstream 1365 94851926 ~ 94861352 (-)
acad9 acad9 coding downstream 342241 94484281 ~ 94519204 (-)
LOC110494858 LOC106566283 coding downstream 468513 94363767 ~ 94392932 (-)
isy1 isy1 coding downstream 506372 94323721 ~ 94355073 (-)
LOC110494846 LOC106566275 coding downstream 539759 94257151 ~ 94321686 (-)
cstf1 cstf1 coding upstream 32148 95028386 ~ 95047466 (-)
LOC110493309 LOC106566266 coding upstream 164449 95160687 ~ 95164816 (-)
G1508522 NA non-coding downstream 10863 94848713 ~ 94850582 (-)
G1508516 NA non-coding downstream 18609 94842619 ~ 94842836 (-)
G1508514 NA non-coding downstream 22179 94839047 ~ 94839266 (-)
G1508411 NA non-coding downstream 28758 94832471 ~ 94832687 (-)
G1508569 NA non-coding upstream 4129 95000367 ~ 95001506 (-)
G1508571 NA non-coding upstream 5945 95002183 ~ 95003862 (-)
G1508573 NA non-coding upstream 6774 95003012 ~ 95005198 (-)
G1508574 NA non-coding upstream 6900 95003138 ~ 95004331 (-)
G1508578 NA non-coding upstream 15215 95011453 ~ 95011848 (-)
G1507961 timp4 other downstream 663366 94164090 ~ 94198079 (-)
LOC110493308 NA other downstream 1331507 93500200 ~ 93529938 (-)
G1507093 NA other downstream 1454233 93406293 ~ 93407212 (-)
G1506957 NA other downstream 1772737 93085682 ~ 93088708 (-)
G1506965 NA other downstream 1817080 93043731 ~ 93044365 (-)
G1508667 NA other upstream 69407 95065645 ~ 95067363 (-)
G1508666 NA other upstream 74744 95070982 ~ 95080563 (-)
G1508553 NA non-coding upstream 94818 94962861 ~ 94963489 (-)

Expression


Co-expression Network