cstf1 (cstf1)


Basic Information

Item Value
gene id cstf1
gene name cstf1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 95028386 ~ 95047466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951008.1
TTAACCCGTTTGGTGCAGTCGTTGCTTGCACAATGttgggctagctagctagcagtagaTAAGTTCAATCAATGCATTTTCATTTAACGTTATTTGATTTTACTTCCCTAAACTCGGTTGGTTATTATTGCAAACATAAGCCAAGTTCGTTGAAGAAGCCTGAGCGGAGATGTACCGTCCCAAACCGACGCTGCGGGACCGACAGCACCTGTACCGGCTGATCATCAGCCAGTTGCTGTATGACGGTTACACCAACATCGCCAACAACCTCATCACGGAGGTGAAGCCACAGAGCGTCGTGTCGCCCTCTGAGAACCTCATGCAGCTGGCCAAGATAGgcatGGAGAATGATGACAGTGCGGTGCAGTATGCCATCGGGCGGTCTGACACAGTGGCACCAGGCGTTGGCATCGACCTGGAGTTTGACGCTGACGTCCAGTCCATGTCCCCCGAGGCGTCTGAGTACGAGACTTGTTACGTGACGTCTCATAAGGGTCCCTGTCGCGTGGCCACCTACAGCCGGGACGGGCAGCTCATTGCTACGGGCTCTGCAGACGCCTCCATCAAAGTCCTGGACACAGAACGTATGCTGGCCAAGAGTGCCATGCCCATAGagGTGATGATGAATGAGACAGCCCAGCAGAACATGGAGAACCACCCTGTGATCAGAACACTGTACGACCACGTGGATGAGGTCACGTGTCTGGCATTCCACCCCACGGAACAGATCCTGGCGTCTGGGTCACGTGACTACACCCTCAAACTGTTTGACTACTCCAAGCCCTCTGCCAAGAGAGCCTTCAAACATGTACAGGAAGCAGAGATGCTGCGTGCCATCTCCTTCCACCCGTCAGGTGACTTCCTTTTGGTGGGGACACAGCACCCGACCCTCCGCCTCTACGACGTTAACACCTTCCAATGCTTCGTCTCCTGCAACCCTCTAGACCAGCATACTGACACCATCAGTGGAGTCAACTACAACCCTAATGCTAACagCTATGTGACGTGCAGTAAGGACGGCAGTATCAAGCTGTGGGACGGTGTGTCTAACCGCTGTGTGATGACGTTTGATAAGGCCCATGATGGGGCGGAGGTCTGCTCCGCTGTCTTCTCGAAGAACTCCAAGTACGTCCTCTCCACCGGGAAAGACTCTGTCGCCAAACTGTGGGAGATCTCCACCGGGCGCCCcttggtcaaatacacagGTGCTGGTCTGAGTGGTCGTCAGATGCATCGTACCCAGGGTGTGTTCAACCACACAGAGGACTATGTTCTGCTGCCTGATGAGAGAACCATCTCTCTATGCTGCTGGGACTCCCgatctgcagagaggaagaaCCTTCTGTCCCTGGGTCACAACAACATCGTCCGCTGTATCGTCCACTCCCCCACCAACCCAGGTTTCATGACCTGTAGTGATGACTTCAGGGCCCGCTTTTGGTACAGACGTACTACCACCGACTGAGACCCCTCTATTGTACCTCTGACCCCTCTGTACCAACACACTACCACAGAGCCCAAAATCCCTCACCACTGAGGAAACCCCCATTGACGAAGACTCCACAGCCAAACAGCTCCTTACCTGACACTGGACAGCATCAGGGTCCTGCAGCCTCAGACGTTACAACAAACCGTGTCTGAGTTGACTACCCTGCCTCCATCTTGGACTGGATTTCAGTGGCGCTAGTGGAGTCTTTCTGATGACTCTGTAATGGCTTGTCATGACTGTAGTACCCAGGTATGACAGCCAGGTGGCCGTGTTTGACCAGTGAGTTTCTATCTGGGCCTGGTTTCACCATGGTCGGTAGCCATGTTGGTAGagaacacagctgattggctggcTGATTACATGAACAGCGTTGTTGGGAATAGTAATCATTAACTAATCTTCTAGATATTTTGAAGACCGTGAGCAACATGCTCATTAATACGTTTCTTTAATCTTTTGATAAAACAACTCCGTAGTTGAGTTTGTTTTCCACTTTTTCCccttttttttgtttgtctttcTGATGTTACACATTTTTATTAAAACATTGAAGAAAATA
>XM_036951007.1
ACCCACGCCCCGTTACGTACCGACGCAAAGATGTGATACGTGATGCAAGTGACGCAGTTACGCAGCGCATGCTTTGTAACCCCAAGCGTCCCTTGAACCAAGGCAAAGGTATTTTTGCAACATTTGAAAGGTTTTATCCAAGTTCGTTGAAGAAGCCTGAGCGGAGATGTACCGTCCCAAACCGACGCTGCGGGACCGACAGCACCTGTACCGGCTGATCATCAGCCAGTTGCTGTATGACGGTTACACCAACATCGCCAACAACCTCATCACGGAGGTGAAGCCACAGAGCGTCGTGTCGCCCTCTGAGAACCTCATGCAGCTGGCCAAGATAGgcatGGAGAATGATGACAGTGCGGTGCAGTATGCCATCGGGCGGTCTGACACAGTGGCACCAGGCGTTGGCATCGACCTGGAGTTTGACGCTGACGTCCAGTCCATGTCCCCCGAGGCGTCTGAGTACGAGACTTGTTACGTGACGTCTCATAAGGGTCCCTGTCGCGTGGCCACCTACAGCCGGGACGGGCAGCTCATTGCTACGGGCTCTGCAGACGCCTCCATCAAAGTCCTGGACACAGAACGTATGCTGGCCAAGAGTGCCATGCCCATAGagGTGATGATGAATGAGACAGCCCAGCAGAACATGGAGAACCACCCTGTGATCAGAACACTGTACGACCACGTGGATGAGGTCACGTGTCTGGCATTCCACCCCACGGAACAGATCCTGGCGTCTGGGTCACGTGACTACACCCTCAAACTGTTTGACTACTCCAAGCCCTCTGCCAAGAGAGCCTTCAAACATGTACAGGAAGCAGAGATGCTGCGTGCCATCTCCTTCCACCCGTCAGGTGACTTCCTTTTGGTGGGGACACAGCACCCGACCCTCCGCCTCTACGACGTTAACACCTTCCAATGCTTCGTCTCCTGCAACCCTCTAGACCAGCATACTGACACCATCAGTGGAGTCAACTACAACCCTAATGCTAACagCTATGTGACGTGCAGTAAGGACGGCAGTATCAAGCTGTGGGACGGTGTGTCTAACCGCTGTGTGATGACGTTTGATAAGGCCCATGATGGGGCGGAGGTCTGCTCCGCTGTCTTCTCGAAGAACTCCAAGTACGTCCTCTCCACCGGGAAAGACTCTGTCGCCAAACTGTGGGAGATCTCCACCGGGCGCCCcttggtcaaatacacagGTGCTGGTCTGAGTGGTCGTCAGATGCATCGTACCCAGGGTGTGTTCAACCACACAGAGGACTATGTTCTGCTGCCTGATGAGAGAACCATCTCTCTATGCTGCTGGGACTCCCgatctgcagagaggaagaaCCTTCTGTCCCTGGGTCACAACAACATCGTCCGCTGTATCGTCCACTCCCCCACCAACCCAGGTTTCATGACCTGTAGTGATGACTTCAGGGCCCGCTTTTGGTACAGACGTACTACCACCGACTGAGACCCCTCTATTGTACCTCTGACCCCTCTGTACCAACACACTACCACAGAGCCCAAAATCCCTCACCACTGAGGAAACCCCCATTGACGAAGACTCCACAGCCAAACAGCTCCTTACCTGACACTGGACAGCATCAGGGTCCTGCAGCCTCAGACGTTACAACAAACCGTGTCTGAGTTGACTACCCTGCCTCCATCTTGGACTGGATTTCAGTGGCGCTAGTGGAGTCTTTCTGATGACTCTGTAATGGCTTGTCATGACTGTAGTACCCAGGTATGACAGCCAGGTGGCCGTGTTTGACCAGTGAGTTTCTATCTGGGCCTGGTTTCACCATGGTCGGTAGCCATGTTGGTAGagaacacagctgattggctggcTGATTACATGAACAGCGTTGTTGGGAATAGTAATCATTAACTAATCTTCTAGATATTTTGAAGACCGTGAGCAACATGCTCATTAATACGTTTCTTTAATCTTTTGATAAAACAACTCCGTAGTTGAGTTTGTTTTCCACTTTTTCCccttttttttgtttgtctttcTGATGTTACACATTTTTATTAAAACATTGAAGAAAATA
>XM_036951006.1
TAAGAGCTTCTAAGTGCGTTCTATTCATTGTCAATTCTATGGTCAAAACCCACGCCCCGTTACGTACCGACGCAAAGATGTGATACGTGATGCAAGTGACGCAGTTACGCAGCGCATGCTTTGTAACCCCAAGCGTCCCTTGAACCAAGGCAAAGCCAAGTTCGTTGAAGAAGCCTGAGCGGAGATGTACCGTCCCAAACCGACGCTGCGGGACCGACAGCACCTGTACCGGCTGATCATCAGCCAGTTGCTGTATGACGGTTACACCAACATCGCCAACAACCTCATCACGGAGGTGAAGCCACAGAGCGTCGTGTCGCCCTCTGAGAACCTCATGCAGCTGGCCAAGATAGgcatGGAGAATGATGACAGTGCGGTGCAGTATGCCATCGGGCGGTCTGACACAGTGGCACCAGGCGTTGGCATCGACCTGGAGTTTGACGCTGACGTCCAGTCCATGTCCCCCGAGGCGTCTGAGTACGAGACTTGTTACGTGACGTCTCATAAGGGTCCCTGTCGCGTGGCCACCTACAGCCGGGACGGGCAGCTCATTGCTACGGGCTCTGCAGACGCCTCCATCAAAGTCCTGGACACAGAACGTATGCTGGCCAAGAGTGCCATGCCCATAGagGTGATGATGAATGAGACAGCCCAGCAGAACATGGAGAACCACCCTGTGATCAGAACACTGTACGACCACGTGGATGAGGTCACGTGTCTGGCATTCCACCCCACGGAACAGATCCTGGCGTCTGGGTCACGTGACTACACCCTCAAACTGTTTGACTACTCCAAGCCCTCTGCCAAGAGAGCCTTCAAACATGTACAGGAAGCAGAGATGCTGCGTGCCATCTCCTTCCACCCGTCAGGTGACTTCCTTTTGGTGGGGACACAGCACCCGACCCTCCGCCTCTACGACGTTAACACCTTCCAATGCTTCGTCTCCTGCAACCCTCTAGACCAGCATACTGACACCATCAGTGGAGTCAACTACAACCCTAATGCTAACagCTATGTGACGTGCAGTAAGGACGGCAGTATCAAGCTGTGGGACGGTGTGTCTAACCGCTGTGTGATGACGTTTGATAAGGCCCATGATGGGGCGGAGGTCTGCTCCGCTGTCTTCTCGAAGAACTCCAAGTACGTCCTCTCCACCGGGAAAGACTCTGTCGCCAAACTGTGGGAGATCTCCACCGGGCGCCCcttggtcaaatacacagGTGCTGGTCTGAGTGGTCGTCAGATGCATCGTACCCAGGGTGTGTTCAACCACACAGAGGACTATGTTCTGCTGCCTGATGAGAGAACCATCTCTCTATGCTGCTGGGACTCCCgatctgcagagaggaagaaCCTTCTGTCCCTGGGTCACAACAACATCGTCCGCTGTATCGTCCACTCCCCCACCAACCCAGGTTTCATGACCTGTAGTGATGACTTCAGGGCCCGCTTTTGGTACAGACGTACTACCACCGACTGAGACCCCTCTATTGTACCTCTGACCCCTCTGTACCAACACACTACCACAGAGCCCAAAATCCCTCACCACTGAGGAAACCCCCATTGACGAAGACTCCACAGCCAAACAGCTCCTTACCTGACACTGGACAGCATCAGGGTCCTGCAGCCTCAGACGTTACAACAAACCGTGTCTGAGTTGACTACCCTGCCTCCATCTTGGACTGGATTTCAGTGGCGCTAGTGGAGTCTTTCTGATGACTCTGTAATGGCTTGTCATGACTGTAGTACCCAGGTATGACAGCCAGGTGGCCGTGTTTGACCAGTGAGTTTCTATCTGGGCCTGGTTTCACCATGGTCGGTAGCCATGTTGGTAGagaacacagctgattggctggcTGATTACATGAACAGCGTTGTTGGGAATAGTAATCATTAACTAATCTTCTAGATATTTTGAAGACCGTGAGCAACATGCTCATTAATACGTTTCTTTAATCTTTTGATAAAACAACTCCGTAGTTGAGTTTGTTTTCCACTTTTTCCccttttttttgtttgtctttcTGATGTTACACATTTTTATTAAAACATTGAAGAAAATA

Function

symbol description
cstf1 Predicted to be part of mRNA cleavage stimulating factor complex. Orthologous to human CSTF1 (cleavage stimulation factor subunit 1).

NR:

description
cleavage stimulation factor subunit 1

GO: NA

KEGG:

id description
K14406 CSTF1; cleavage stimulation factor subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951008.1 False 2048 mRNA 0.51 7 95028386 95047194
XM_036951007.1 False 2045 mRNA 0.52 7 95028386 95047419
XM_036951006.1 True 2063 mRNA 0.52 7 95028386 95047466

Neighbor

gene id symbol gene type direction distance location
phf2 phf2 coding downstream 32148 94861445 ~ 94996238 (-)
LOC118940516 NA coding downstream 168306 94851926 ~ 94861352 (-)
acad9 acad9 coding downstream 509182 94484281 ~ 94519204 (-)
LOC110494858 LOC106566283 coding downstream 635454 94363767 ~ 94392932 (-)
isy1 isy1 coding downstream 673313 94323721 ~ 94355073 (-)
LOC110493309 LOC106566266 coding upstream 113221 95160687 ~ 95164816 (-)
G1508650 NA non-coding downstream 930 95026554 ~ 95027456 (-)
G1508644 NA non-coding downstream 10750 95017405 ~ 95017636 (-)
G1508578 NA non-coding downstream 16538 95011453 ~ 95011848 (-)
G1508573 NA non-coding downstream 23188 95003012 ~ 95005198 (-)
G1508574 NA non-coding downstream 24055 95003138 ~ 95004331 (-)
G1508662 NA non-coding upstream 8411 95055877 ~ 95056078 (-)
G1508663 NA non-coding upstream 9395 95056861 ~ 95057070 (-)
G1508665 NA non-coding upstream 13879 95061345 ~ 95061546 (-)
G1508672 NA non-coding upstream 39160 95086626 ~ 95088421 (-)
G1508679 NA non-coding upstream 55977 95103443 ~ 95103686 (-)
G1507961 timp4 other downstream 830307 94164090 ~ 94198079 (-)
LOC110493308 NA other downstream 1498448 93500200 ~ 93529938 (-)
G1507093 NA other downstream 1621174 93406293 ~ 93407212 (-)
G1506957 NA other downstream 1939678 93085682 ~ 93088708 (-)
G1508667 NA other upstream 18179 95065645 ~ 95067363 (-)
G1508666 NA other upstream 23516 95070982 ~ 95080563 (-)

Expression


Co-expression Network