LOC110493309 (LOC106566266)


Basic Information

Item Value
gene id LOC110493309
gene name LOC106566266
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 95160687 ~ 95164816 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948450.1
AGATGGTCGCAACAAGAAGTGTAGAAAATAGCGTAAATGAGTATTGTGCAGGCGCTGCATAGAATAAAAACATGCGATTTGTGGGAAATTATAATAGCTTTCTTAACAAGGGAAGACGCTTTGTACGCCGTCGCATGGATACATGTATTAATATTGTGTCCGTTTTTATAATCGGACAGATCCTAAAAAACAGCCGCTGCTGTTTAATCGAAATGTAGAAGACCAAAACGGGTCTTTAATTCTAGGTTTACAGTCGCTATTTTCCTTTACACGCGAAGGTTGAAATCATTGATCGGTTCATATGCTATTCGTTTTTCATCTGATTGTATTTCGTTTTTGAATAATTATATTAatggtaggctatattatatctAGTGCATTATTGATACACTGCTGAATTTCTATCTCTCTCAAACTGGGCCATGTTTTATTTTAAACTAGTTTTAATCTCTGAGATTATTTCTCGTTTATTGGATGGACTCCGGTCGTAACCCAGGATGGGGACTGTTGTGCAGCAAAGCGCTGCAACTGGACTCAACAAGCTCCCTAGCAGGGTGGAGCGGGAATGGGCCAAAAGTTCATGGACCGACAAACATGTGACGAGCACCAGAATGACGACCCAAAAGAAGCCTTTGCATCCCCAGATGATGATCCCAAGTGTGGACAACACTCACATTCCCACCCCGTCAGCAGACAAGAAGCAGCAAAGAAGACAGAAGCACAAACCAAACATTCCTTCAGTCAAACACAACACCAACACCTCTGAACTCAGCACTCAGGGCCAGTTGGACCCTCCTTCATTGCCCCTGTTATCAGCTTTggatgggaaggagaggagagagaggagcaggaggagagagcagcaggagaggagggagaggagagagcagagggagaaggagaggagggaggatcaGGAGAGGGAGGCTCAGAGCAGCCATCACAGGGAACAGAAGCAGACTGTCTCCAGGAGGAGTAGACAAGCTGTGTCCCTTCCTCACAACCACAGTTCCAGCCATAGCTCCCAGGTCCTgcctggaggtgtacctgtgggccAGAGGACAGCCCAGGTGTCTGGGGGGTTGGGTTGTGTAGAGGGGGATGTAGGGGggaaagagaagggagaaggggacATATACAGTGACATAGACACAGACCTGTCTGAATCAGAGaggctccctctcccctcctaccCATCCTCCCCCGCTAACCTCGACCTCCGTCCAGAGGTCATCTTTCCCCATGACTTCCAACCTGATCTCCCTGGACCCCGAGGCCACGCCCCTGGTCTGTTCAGCTACCCAGAtttcctccctccacccttcaaCTCCTGGAGCCTCCGGCAGCTGGCCGTGTTTCTCCACCCAGAGGGAAGACACCCCCCCCGCTCCAGACCTGCAGGCATGGCCCTGGACAGGTACCTGGAGCAGCTACTGCTGCTGGAGTGGCTCCGGATCCAGACGGTTCAGGAGGAGAGTGGGAGTGTGTCCTCTGTTCCAACCAGTCGCTACTGTTCCCACCATGGTGCACCCTCCCTCCATGGGAGACTCAGCTCTCCCAAATGCATCCTCCAGTGCCAGAGAGCTTTCCctgttactctcctctcctccctgtctccctctgccccGCTGTCTGGCTGCTCACATTACCACGCTCGCTACCCGCCCTGTACTGGGACCTGCCACTCACACACCTCCCCCTGCCTCAACCCCTTCTCTGACCATCGGGGCCGTGTCTCTCTCCCCAAGAGGAGCTACAGTGAGAGTCGGGTCCACTCTGCTGAGAAGGCCTCTGGGCATCAGAGTTGTGGGAGCCCTGCCATGGGGATCGGCCACCTGAAACGGATGCAGGCTTTTGGGAACATCCGTAACCCTGTAGCCGTTAGTCCGACCAGAAGGCAGAGGTCATCGTCTGTAGTCAGGAACCCCAGTtttgggtcagggtcagggactGGGTCAGGGACTGGGACTCCCAGAGGATGTAATTGTGTTGGGTCTGGATCTAGTGGTGCCCTCTATGAAGTCTCCAGTAGcgtgagaaggaggagggggagaagtgaATCTGAgcgaaggagagggacagggactgGGTTTGGATCAGGGACTGGATCTGGATCAGGGACTGGGTGTGAGGCTTGGGAAAGGGCTATGGAGAGGGCTGGTTTTGGGATCGGGTTTGGGACTGGCAGGGGACTGCACTGGACAGGGTCTGGGTCTGGGACTGGGGCTTGGGCATGGTCTGCGGCTGGGGCAAGGGCTAGTAAGAGGGCTAGGGAGAGGGCTGGGGAGTGGTttggggctggggagaggCAGGCCAAGGGCATCGACAGTAGTCAGGCACCCCAGACAGgccagggtgaggaggaggagaagtggatCTGA
>TU1725552
ccctctcccctcctaccCATCCTCCCCCGCTAACCTCGACCTCCGTCCAGAGGTCATCTTTCCCCATGACTTCCAACCTGATCTCCCTGGACCCCGAGGCCACGCCCCTGGTCTGTTCAGCTACCCAGAtttcctccctccacccttcaaCTCCTGGAGCCTCCGGCAGCTGGCCGTGTTTCTCCACCCAGAGGGAAGACACCCCCCCCGCTCCAGACCTGCAGGCATGGCCCTGGACAGGTACCTGGAGCAGCTACTGCTGCTGGAGTGGCTCCGGATCCAGACGGTTCAGGAGGAGAGTGGGAGTGTGTCCTCTGTTCCAACCAGTCGCTACTGTTCCCACCATGGTGCACCCTCCCTCCATGGGAGACTCAGCTCTCCCAAATGCATCCTCCAGTGCCAGAGAGCTTTCCctgttactctcctctcctccctgtctccctctgccccGCTGTCTGGCTGCTCACATTACCACGCTCGCTACCCGCCCTGTACTGGGACCTGCCACTCACACACCTCCCCCTGCCTCAACCCCTTCTCTGACCATCGGGGCCGTGTCTCTCTCCCCAAGAGGAGCTACAGTGAGAGTCGGGTCCACTCTGCTGAGAAGGCCTCTGGGCATCAGAGTTGTGGGAGCCCTGCCATGGGGATCGGCCACCTGAAACGGATGCAGGCTTTTGGGAACATCCGTAACCCTGTAGCCGTTAGTCCGACCAGAAGGCAGAGGTCATCGTCTGTAGTCAGGAACCCCAGTtttgggtcagggtcagggactGGGTCAGGGACTGGGACTCCCAGAGGATGTAATTGTGTTGGGTCTGGATCTAGTGGTGCCCTCTATGAAGTCTCCAGTAGcgtgagaaggaggagggggagaagtgaATCTGAgcgaaggaga
>TU1725550
CTTTGTACGCCGTCGCATGGATACATGTATTAATATTGTGTCCGTTTTTATAATCGGACAGATCCTAAAAAACAGCCGCTGCTGTTTAATCGAAATGTAGAAGACCAAAACGGGTCTTTAATTCTAGGTTTACAGTCGCTATTTTCCTTTACACGCGAAGGTTGAAATCATTGATCGGTTCATATGCTATTCGTTTTTCATCTGATTGTATTTCGTTTTTGAATAATTATATTAatggtaggctatattatatctAGTGCATTATTGATACACTGCTGAATTTCTATCTCTCTCAAACTGGGCCATGTTTTATTTTAAACTAGTTTTAATCTCTGAGATTATTTCTCGTTTATTGGATGGACTCCGGTCGTAACCCAGGATGGGGACTGTTGTGCAGCAAAGCGCTGCAACTGGACTCAACAAGCTCCCTAGCAGGGTGGAGCGGGAATGGGCCAAAAGTTCATGGACCGACAAACATGTGACGAGCACCAGAATGACGACCCAAAAGAAGCCTTTGCATCCCCAGATGATGATCCCAAGTGTGGACAACACTCACATTCCCACCCCGTCAGCAGACAAGAAGCAGCAAAGAAGACAGAAGCACAAACCAAACATTCCTTCAGTCAAACACAACACCAACACCTCTGAACTCAGCACTCAGGGCCAGTTGGACCCTCCTTCATTGCCCCTGTTATCAGCTTTggatgggaaggagaggagagagaggagcaggaggagagagcagcaggagaggagggagaggagagagcagagggagaaggagaggagggaggatcaGGAGAGGGAGGCTCAGAGCAGCCATCACAGGGAACAGAAGCAGACTGTCTCCAGGAGGAGTAGACAAGCTGTGTCCCTTCCTCACAACCACAGTTCCAGCCATAGCTCCCAGGTCCTgcctggaggtgtacctgtgggccAGAGGACAGCCC

Function

NR:

description
protein FAM217B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948450.1 False 2381 mRNA 0.54 6 95160687 95164816
TU1725552 False 898 TUCP 0.60 2 95161385 95162804
TU1725550 True 950 TUCP 0.47 4 95162914 95164698

Neighbor

gene id symbol gene type direction distance location
cstf1 cstf1 coding downstream 113221 95028386 ~ 95047466 (-)
phf2 phf2 coding downstream 164449 94861445 ~ 94996238 (-)
LOC118940516 NA coding downstream 300607 94851926 ~ 94861352 (-)
acad9 acad9 coding downstream 641483 94484281 ~ 94519204 (-)
LOC110494858 LOC106566283 coding downstream 767755 94363767 ~ 94392932 (-)
G1508725 NA non-coding downstream 1237 95158965 ~ 95159450 (-)
G1508721 NA non-coding downstream 2072 95158350 ~ 95158615 (-)
G1508712 NA non-coding downstream 8959 95148664 ~ 95151728 (-)
G1508707 NA non-coding downstream 14916 95145428 ~ 95145771 (-)
G1508701 NA non-coding downstream 18072 95142402 ~ 95142615 (-)
G1508747 NA non-coding upstream 5739 95170555 ~ 95190327 (-)
G1508744 NA non-coding upstream 5977 95170793 ~ 95188681 (-)
G1508666 NA other downstream 80124 95070982 ~ 95080563 (-)
G1508667 NA other downstream 93324 95065645 ~ 95067363 (-)
G1507961 timp4 other downstream 962608 94164090 ~ 94198079 (-)
LOC110493308 NA other downstream 1630749 93500200 ~ 93529938 (-)

Expression


Co-expression Network