XLOC_003344 (CT956066.1)


Basic Information

Item Value
gene id XLOC_003344
gene name CT956066.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 14081540 ~ 14082177 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006546
GGCCAGaggtcaccaagcttgaactttgcaacacagcaaactgcgaaacttagCAGGAATATGACTGGAAGTCTAAGGGGAGAAAAGTACAGTGTGAACGCAGCTTGAGTGTGTTAAAGCAGTGTTCAAACTAAACTgagcagggctgcagccctccaggaagaGTTTGACACCCCTAAGCTGCCAGGTAGGAGGTACGAGCCATCCACATGCTGACAAAACGATAGTGTTCTCCAGACACCACGTTCCTGAGGAAGCCTAAAAGCACACAATCAATCTCTGACATTGTAATTATGCACTCAAGAAGGAAGCACTGATCTTTTGGGAGAACACGTAATTGTTTACCTTTGTTTTCCTCATTCTCTGCTAATGCCTTCACACTGGACATTAGAATATCATCATAACCCAGGCACTCGTCCAGGAGGAAGCGACTGAAACCATCTCCAAAGCACTGATCTTTCATTGGATCTACAGACAAGCAGAGAGAGATTGACAGAGATTCACAATG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097955

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006546 True 508 lncRNA 0.46 2 14081540 14082177

Neighbor

gene id symbol gene type direction distance location
XLOC_003343 grin3bb coding upstream 16556 14004236 ~ 14064984 (+)
XLOC_003342 AL928649.1 coding upstream 216576 13864846 ~ 13864964 (+)
XLOC_003341 CR555295.2 coding upstream 263856 13817569 ~ 13817684 (+)
XLOC_003340 wdr18 coding upstream 292089 13642157 ~ 13789451 (+)
XLOC_003339 si:ch211-1a19.3 coding upstream 441069 13629528 ~ 13640471 (+)
XLOC_003345 med16 coding downstream 22240 14104417 ~ 14143702 (+)
XLOC_003346 plppr3b coding downstream 65736 14147913 ~ 14161975 (+)
XLOC_003347 palm1a coding downstream 117625 14199802 ~ 14267855 (+)
XLOC_003348 si:ch211-262i1.3 coding downstream 198421 14280598 ~ 14293026 (+)
XLOC_003349 si:ch211-262i1.4 coding downstream 212834 14295011 ~ 14300253 (+)
XLOC_003318 CR450764.6 misc upstream 1369544 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 1387277 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 1395941 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 1401512 12679732 ~ 12680028 (+)
XLOC_003314 CR450764.9 misc upstream 1457689 12623555 ~ 12623851 (+)
XLOC_003369 CR854846.2 misc downstream 2040609 16122786 ~ 16123082 (+)
XLOC_003332 NA non-coding upstream 886943 13193723 ~ 13194597 (+)
XLOC_003329 CR847923.1 non-coding upstream 929155 13151919 ~ 13152385 (+)
XLOC_003322 NA non-coding upstream 1296481 12782215 ~ 12785059 (+)
XLOC_003353 BX571942.1 non-coding downstream 349096 14431273 ~ 14640317 (+)
XLOC_003355 CU019562.3 non-coding downstream 780109 14862286 ~ 14863542 (+)
XLOC_003356 CU019562.2 non-coding downstream 820532 14902709 ~ 14904977 (+)
XLOC_003358 CR550302.2 non-coding downstream 935008 15017185 ~ 15018524 (+)
XLOC_003359 NA non-coding downstream 1257167 15339344 ~ 15341413 (+)

Expression


Co-expression Network