G1412901


Basic Information

Item Value
gene id G1412901
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 1077220 ~ 1079248 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1614823
CAGCGTATTCTTTAACGTTGACACGTTTTGCATCGATACAATATTTGACACAGTTGCAGGGGAGGACGTAACAACGAGGGGAAAGTAAAGACAgcaaaaataaagacatttaaacgccacaacaacaaaaagtattcCATACAAAAGTAATAATGCCactagactgtctgtctgttgtagGGAAAAGACCAACCACGCCAAAAAAACCACCTCTTGTTGTTTCACAAAATGGCttcctattccctttctagtacactgcactacacagggccctattccctttctagtacACTGCACTACACAGGGAGCCATTTAGGACACATCATCAGAGAAGGTTCTAGCAGGATCTATAAAATTAGAGGGGAGGGGCTTTAActttatacatatattttttaaaaaggaAGTTATTTAAACTACATTTAAAATCCTACTACAGCACCAGGACAGTGTTACACTAGAATCAGTCAAGTGgcattggggggtgggggggggggggggttaagagaCACTTAATGATGGTTCACGATGAACGGGACACAGAGGCAACATTTTTACGGTTAAAACTAAACCGGTTTGGCACCGGTAACAGACACAGTGAGGGGAAAGATTTCAGACTCGGTGACAGTAACTAGGAGGTCGTGGAACAACGAGCCTGTTCAGGATGATACAACGTAGAAAATACACACCCACACCATGACACGATTCCCTCTTCTATAGAACAAAGAAGCGCATCAAATCTAGATAGTGTATTTCTAGATGAATATTCTATAAACGTTGATCCTCATGGAACACAGACCCCGGCTGTGAACCAAATGGCCCCCATccccctatatagagcactagttttgaccatAGCGCTATAGACCCCTGGTTAAGAGTAGTGGAACTGAGATCAGACTGCCATTTCAGAGCCTGGTGGGTCAGGCGAGTAGAGCCTGGGTGTGAGTTCTCTCTCCGTACTGAACAGCTGTCAGTAGCGCCACAACATGCAGAGTGGTAACTACCTAATCCATCACGATACAGGGGATTTATCAATCAATCAGAAATGAAAAACAGTgcgagcaacaacaacaaaaaaggcagTGAAAAagagattagggtgccatttgggacacacattccatagtgcactactttgaaccagagccctattgaccgtagttaaaagtagtgtactatatacagattagggtgccatttgggacataacaatccatagtgcactagtttgaaccagagccctattgaccgtagttaaaagtagtgtactatatacagattagggtgccatttgggacataacaatccatagtgcactagtttgaaccagagccctattgaccGTAGTTaaaagtagtgtgctatatacggaatagggtgccatttaggaccgTCTTTTTCTTTCCTAAAGAATATCCTGCTATACCACATGCTGAGGAATCCTATCATGATTTATGGCTTTGTTTCTCTCAGCCAGTCAGATAAGTGCAGCTGGTTGAAACTTCAGGCCTCGTTCCAAACCCGGTCCTAGGGGGTAGGAGTCAAGTGGCCAGGGGTAGGAAGTAGGAACCCAGGTGGTAAGGAGCCAGGGTTCCATCGCTACCAGACCTGAGGAACGTCGAACAGAGTAGACGTCGTCTCTGC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1614823 True 1644 lncRNA 0.44 3 1077220 1079248
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110485352 LOC106594003 coding upstream 2104 1069986 ~ 1075471 (+)
LOC110485350 LOC106593608 coding upstream 13896 1053813 ~ 1063324 (+)
LOC110485351 LOC106593629 coding upstream 23732 1047782 ~ 1053488 (+)
LOC118940177 LOC106595452 coding upstream 310921 663730 ~ 766299 (+)
LOC110491211 LOC106564126 coding upstream 423367 650262 ~ 653853 (+)
LOC110516881 LOC106595542 coding downstream 62839 1142087 ~ 1158647 (+)
LOC110515042 LOC106564127 coding downstream 86838 1166086 ~ 1173984 (+)
LOC110493374 LOC106595501 coding downstream 98554 1177802 ~ 1209158 (+)
LOC110494868 LOC106564131 coding downstream 140383 1219631 ~ 1249233 (+)
LOC110515478 LOC106595381 coding downstream 184548 1263796 ~ 1309357 (+)
G1412912 NA non-coding upstream 9993 1067003 ~ 1067227 (+)
G1412910 NA non-coding upstream 12366 1064509 ~ 1064854 (+)
G1412907 NA non-coding upstream 21860 1054429 ~ 1055360 (+)
G1412919 NA non-coding downstream 2623 1081871 ~ 1082292 (+)
G1412923 NA non-coding downstream 15399 1094647 ~ 1095074 (+)
G1412928 LOC106564122 non-coding downstream 24270 1103518 ~ 1108460 (+)
G1412932 NA non-coding downstream 33484 1112732 ~ 1113031 (+)
G1412935 NA non-coding downstream 38332 1117580 ~ 1118173 (+)
G1412853 NA other upstream 81931 994716 ~ 995289 (+)
G1412594 NA other upstream 443132 627262 ~ 634088 (+)
G1412926 NA other downstream 18998 1098246 ~ 1098614 (+)
G1412947 LOC106596877 other downstream 60552 1139800 ~ 1140309 (+)
LOC118940052 LOC106595394 other downstream 245876 1324945 ~ 1343422 (+)
G1413121 LOC106595424 other downstream 577913 1657161 ~ 1679798 (+)

Expression

G1412901 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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G1412901 Expression in each Bioproject

Bar chart with 16 bars.
G1412901 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Co-expression Network