G1415101


Basic Information

Item Value
gene id G1415101
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 2902162 ~ 2905404 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1617878
agcagggggaagggttgtagtctgtaggtaccggggtggttctgtgtgttgtaGATAGTTGCTGTAGCAGGGGGAAGGGTTGTAGTCTGTAGgtaccggggtggttctgtgtgttgtaGATAGTTGCTGTAGCAGAGGGAAGGGTTGTAGTCTGTAGGTACCGGggtggttctgtgtgttgtaGATAGTTGCTGTAGCAGAGGGAAGGGTTGTAGTCTGTAGgtaccggggtggttctgtgtgttgtaGATAGTTGCTGTAGCAGAGGGAAGGGTTGTAGTCTGTAGGTACCGGggtggttctgtgtgttgtaGATAGTTGCTGTAGCAGGGGGAAGGGTGTCCACTGGATGGGTTCTATGGGCCAGCTGCACACTGACAGGTCACTGGCTTTCCCAGAATCCAACACACACTCCGCCAGGCTGACCTCGCTGACCGCCCAGCCGTACTGGGaa
>TU1617884
ggttctgtgtgttgtagatagttgctgtagcagggggaagggttgtagtctgtaggtaccggggtggttctgtgtgttgtaGATAGTTGCTGTAGCAGAGGGAAGGGTTGTAGTCTGTAGGTACCGGggtggttctgtgtgttgtaGATAGTTGCTGTAGCAGGGGGAAGGGTGTCCACTGGATGGGTTCTATGGGCCAGCTGCACACTGACAGGTCACTGGCTTTCCCAGAATCCAACACACACTCCGCCAGGCTGACCTCGCTGACCGCCCAGCCGTACTGGGaa
>TU1617889
tctgtgtgttgtaGATAGTTGCTGTAGCAGGGGGAAGGGTTGTAGTCTGTAGGTACCGGGGTGGTTCTGTGTGTAGAGGATAGTTGCTGTAGCAGGGGGAAGGGTTGTAGTCTGTAGGTACCGGggtggttctgtgtgttgtaGATAGTTGCTGTAGCAGAGGGAAGGGTTGTAGTCTGTAGGTACCGGggtggttctgtgtgttgtaGATAGTTGCTGTAGCAGGGGGAAGGGTGTCCACTGGATGGGTTCTATGGGCCAGCTGCACACTGACAGGTCACTGGCTTTCCCAGAATCCAACACACACTCCGCCAGGCTGACCTCGCTGACCGCCCAGCCGTACTGGGaa
>TU1617887
agcagggggaagggttgtagtctgtaggtaccggggtggttctgtgtgttgtaGATAGTTGCTGTAGCAGGGGGAAGGGTTGTAGTCTGTAGGTACCGGggtggttctgtgtgttgtaGATAGTTGCTGTAGCAGAGGGAAGGGTTGTAGTCTGTAGgtaccggggtggttctgtgtgttgtagatagttactgtagcagggggaagggttgtagtctgtaggtaccggggtggttctgtgtgttgtaGATAGTTGCTGTAGCAGGGGGAAGGGTTGTAGTCTGTAGGTACCGGGGTGGTTCTGTGTGTAGAGGATAGTTGCTGTAGCAGGGGGAAGGGTTGTAGTCTGTAGGTACCGGGGTGGTTCTGTGTGTAGAGGATAGTTGCTGTAGCAGGGGGAAGGGTTGTAGTCTGTAGGTACCGGggtggttctgtgtgttgtagatagttgctgtagcagggggaagggttg
>TU1617890
tctgtgtgttgtaGATAGTTGCTGTAGCAGGGGGAAGGGTTGTAGTCTGTAGGTACCGGGGTGGTTCTGTGTGTAGAGGATAGTTGCTGTAGCAGGGGGAAGGGTTGTAGTCTGTAGGTACCGGggtggttctgtgtgttgtaGATAGTTGCTGTAGCAGAGGGAAGGGTTGTAGTCTGTAGGTACCGGGGTGGTTCTGTGTGTAGAGGATAGTTTAGCAGGGGGAAGGGTTGTAGTCTGTAGGTACCGGggtggttctgtgtgttgtagatagttgctgtagcagggggaagggttgtagtctgtaggtaccggggtggttctgtgtgttgtagatagttactgtagcagggggaagggttgtagtctgtaggtaccggggtggttctgtgtgttgtagatagttgctgtagcagggggaagggttgtagtctgtaggtaccggggtggttctgtgtgttgtagatagttactgtagcagggggaagggttgtagtctgtaggtaccggggtggttctgtgtgttgtaGATAGTTGCTGTAGCAGGGGGAAGGGTTGTAGTCTGTAGGTACCGGGGTGGTTCTGTGTGTAGAGGATAGTTGCTGTAGCAGGGGGAAGGGTTGTAGTCTGTAGGTACCGGGGTGGTTCTGTGTGTAGAGGATAGTTGCTGTAGCAGGGGGAAGGGTTGTAGTCTGTAGGTACCGGggtggttctgtgtgttgtagatagttgctgtagcagggggaagggttg
>TU1617875
tctgtgtgttgtaGATAGTTGCTGTAGCAGGGGGAAGGGTTGTAGTCTGTAGGTACCGGGGTGGTTCTGTGTGTAGAGGATAGTTGCTGTAGCAGGGGGAAGGGTTGTAGTCTGTAGGTACCGGggtggttctgtgtgttgtaGATAGTTGCTGTAGCAGAGGGAAGGGTTGTAGTCTGTAGgtaccggggtggttctgtgtgttgtaGATAGTTGCTGTAGCAGAGGGAAGGGTTGTAGTCTGTAGGTACCGGGGTGGTTCTGTGTGTAGAGGATAGTTGCTGTAGCAGGGGGAAGGGTTGTAGTCTGTAGGTACCGGggtg
>TU1617882
ggttctgtgtgttgtagatagttgctgtagcagggggaagggttgtagtctgtaggtaccggggtggttctgtgtgttgtaGATAGTTGCTGTAGCAGAGGGAAGGGTTGTAGTCTGTAGGTACCGGggtggttctgtgtgttgtaGATAGTTGCTGTAGCAGAGGGAAGGGTTGTAGTCTGTAGGTACCGGGGggttctgtgtgttgtaGATAGTTGCTGTAGCAGAGGGAAGGGTTGTAGTCTGTAGGTACCGGGGTGGTTCTGTGTGTAGAGGATAGTTGCTGTAGCAGGGGGAAGGGTTGTAGTCTGTAGGTACCGGggtg
>TU1617891
ggttctgtgtgttgtagatagttgctgtagcagggggaagggttgtagtctgtaggtaccggggtggttctgtgtgttgtaGATAGTTGCTGTAGCAGAGGGAAGGGTTGTAGTCTGTAGgtaccggggtggttctgtgtgttgtaGATAGTTGCTGTAGCAGAGGGAAGGGTTGTAGTCTGTAGGTACCGGGGTGGTTCTGTGTGTAGAGGATAGTTGCTGTAGCAGGGGGAAGGGTTGTAGTCTGTAGGTACCGGggtg
>TU1617885
ggttctgtgtgttgtagatagttgctgtagcagggggaagggttgtagtctgtaggtaccggggtggttctgtgtgttgtaGATAGTTGCTGTAGCAGAGGGAAGGGTTGTAGTCTGTAGGTACCGGggtggttctgtgtgttgtaGATAGTTGCTGTAGCAGAGGGAAGGGTTGTAGTCTGTAGGTACCGGGGTGGTTCTGTGTGTAGAGGATAGTTGCTGTAGCAGGGGGAAGGGTTGTAGTCTGTAGGTACCGGggtggttctgtgtgttgtagatagttgctgtagcagggggaagggttgtag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1617878 False 454 lncRNA 0.54 5 2902162 2905404
TU1617884 False 287 lncRNA 0.55 2 2902162 2904912
TU1617889 False 349 lncRNA 0.55 2 2902162 2904649
TU1617887 False 472 lncRNA 0.53 3 2902663 2905404
TU1617890 False 753 lncRNA 0.52 2 2902663 2904649
TU1617875 False 323 lncRNA 0.52 2 2903353 2904649
TU1617882 False 325 lncRNA 0.52 3 2903353 2904912
TU1617891 False 261 lncRNA 0.52 2 2903353 2904912
TU1617885 True 308 lncRNA 0.52 2 2904345 2904912

Neighbor

gene id symbol gene type direction distance location
LOC110511975 LOC106592651 coding downstream 51369 2849351 ~ 2850793 (-)
LOC118940191 LOC106593538 coding downstream 62040 2835197 ~ 2840122 (-)
LOC110513170 NA coding downstream 68370 2818436 ~ 2833792 (-)
LOC118936352 LOC106593206 coding downstream 92056 2801377 ~ 2810350 (-)
LOC110516478 LOC106564555 coding downstream 110154 2782336 ~ 2792008 (-)
LOC118940054 NA coding upstream 51224 2956628 ~ 2957627 (-)
LOC118940193 NA coding upstream 64357 2969761 ~ 2976637 (-)
LOC118936434 NA coding upstream 132220 3037624 ~ 3044905 (-)
LOC118940190 NA coding upstream 142393 3047797 ~ 3053959 (-)
LOC110519887 NA coding upstream 201809 3107213 ~ 3113094 (-)
G1415098 NA non-coding downstream 13698 2886050 ~ 2888464 (-)
G1415093 NA non-coding downstream 19405 2872442 ~ 2882757 (-)
G1415094 NA non-coding downstream 24642 2874476 ~ 2877520 (-)
G1415084 NA non-coding downstream 53185 2848498 ~ 2848977 (-)
G1415049 NA non-coding downstream 93664 2760004 ~ 2808498 (-)
G1415113 NA non-coding upstream 21608 2927012 ~ 3214459 (-)
G1415011 NA non-coding upstream 26474 2931878 ~ 2932338 (-)
G1415123 NA non-coding upstream 45102 2950506 ~ 2950805 (-)
G1415126 NA non-coding upstream 66170 2971574 ~ 2972031 (-)
G1414987 NA non-coding upstream 80701 2986105 ~ 2987630 (-)
LOC110516499 LOC106563979 other downstream 183195 2713556 ~ 2723485 (-)
LOC118940184 LOC106591209 other downstream 269231 2555143 ~ 2642537 (-)
LOC110511869 LOC105029636 other downstream 487439 2404432 ~ 2494634 (-)
LOC110500804 NA other upstream 483871 3388852 ~ 3391857 (-)
G1415450 LOC106594479 other upstream 885719 3776397 ~ 3914299 (-)
LOC110487340 LOC106595892 other upstream 1017178 3890766 ~ 3955806 (-)
LOC118940062 LOC106594488 other upstream 1055642 3961026 ~ 3967368 (-)

Expression

G1415101 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 400.
End of interactive chart.

G1415101 Expression in each Bioproject

Bar chart with 15 bars.
G1415101 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1250.
End of interactive chart.

Co-expression Network