G1414461


Basic Information

Item Value
gene id G1414461
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 3648477 ~ 3649954 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1616951
GTTGAGTTtggtcacatcatttctcaatttgcagtaagtcagccagccaGGTGTGTAGCctgacttattagccactccttttgccccaactCTTTCAAACATacaatttttaaattcctcatcaatccatggagcctgaacagttctaacagtcagtttcttaacaggtacatgtttatcaataattggaagaagccaTTTAATATGGTAAAAAAAGGTCAACACATTAtcagtcaacaatataagacaatgggagcactgtgtatgttctctgatgaatgttaagtcaatgtgatgtgaaatatcaatatacacgctaagataagtaatttctctctcctgtgtggattctctaaTGATATTTAAGTGTAATATGTTATGAGTAATATGTTTTCCCACAGTCTGAGCTTTTGTAAGCCTTCTCCTCTGTGTGCAGTCTCATGTGTTCTTTCATGCTTCCTCAATgggcaaaagctttgcaccctgtGAGGAGTGGttaggcttctcccctgtgtgtgttctctcatgtTTCTTCAGATCACCTGACCggctgaaacactttccacacagggagcagtggtaaggcttctcccctgtgtgaatttTCTGGTGAGCTTTCAGGTGTCCTTTCAgtttaaaactctttccacactgtgagcagtggtaaggcttctcccctgtgtgtgttctctcatgttgtttcagatCCCATAAAGAGTTACAACCCTTTCCACATTGggaacagtggtaaggcttctgccCTGTGTGTAatctctcatgtcgtttcagagACCCTAACAGGttaaaacactttccacactggaaGCAGTGGtgaggcttctcccctgtgtgtattctctcgtgtttgTTAAGGGTTCCTTTATGGCCAAAActttttccacactgggagcagtggaaaggcttctcccctgtgtgtattctctcatgttgtttcagctccCACAAGAGGTtacaaccctttccacagtgggaacacAAGTGTCGTCTTGTTggtttggacgtccctggctctggttcctctgagtctgGTCTATCTC

Function

NR:

description
gastrula zinc finger protein XlCGF17.1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1616951 True 1058 lncRNA 0.43 2 3648477 3649954

Neighbor

gene id symbol gene type direction distance location
trnai-uau-4 NA coding upstream 33315 3615069 ~ 3615162 (+)
LOC118940061 NA coding upstream 38492 3608085 ~ 3609985 (+)
LOC110487186 LOC106595670 coding upstream 65764 3573552 ~ 3582713 (+)
LOC118940207 LOC106595687 coding upstream 79121 3563394 ~ 3569356 (+)
LOC110506843 LOC106595654 coding upstream 91152 3551904 ~ 3557325 (+)
LOC118940205 LOC106585892 coding downstream 20266 3670220 ~ 3678312 (+)
LOC110487326 LOC106607542 coding downstream 33623 3683577 ~ 3711129 (+)
LOC110513872 LOC106593751 coding downstream 71500 3721454 ~ 3728602 (+)
LOC118940209 LOC106607538 coding downstream 83215 3733169 ~ 3750932 (+)
LOC110487330 LOC106591998 coding downstream 105857 3755811 ~ 3768943 (+)
G1414459 NA non-coding upstream 2058 3645725 ~ 3646419 (+)
G1414440 NA non-coding upstream 41647 3605120 ~ 3606830 (+)
G1414431 NA non-coding upstream 45560 3587428 ~ 3602917 (+)
G1414434 NA non-coding upstream 47544 3590393 ~ 3600933 (+)
G1414425 NA non-coding upstream 75907 3572032 ~ 3572570 (+)
G1414475 NA non-coding downstream 35346 3685300 ~ 3693680 (+)
LOC118940210 NA non-coding downstream 128544 3778498 ~ 3794005 (+)
G1414519 NA non-coding downstream 147394 3797348 ~ 3800636 (+)
G1414520 NA non-coding downstream 149121 3799075 ~ 3800119 (+)
G1414212 NA non-coding downstream 156131 3806085 ~ 3851350 (+)
G1414430 NA other upstream 55562 3587244 ~ 3592915 (+)
LOC110506850 LOC106593733 other upstream 122491 3519620 ~ 3526117 (+)
LOC118940198 LOC106593831 other upstream 290783 3355122 ~ 3359173 (+)
LOC110513329 LOC106595349 other upstream 360519 3279105 ~ 3288531 (+)
LOC118940192 NA other upstream 656838 2988823 ~ 2992650 (+)
G1414190 NA other downstream 240809 3890763 ~ 3893220 (+)
LOC118940211 NA other downstream 465708 4115570 ~ 4119613 (+)
LOC118940222 NA other downstream 836672 4486626 ~ 4489118 (+)
LOC110533195 LOC106591134 other downstream 842212 4489324 ~ 4500670 (+)

Expression


Co-expression Network