XLOC_000335


Basic Information

Item Value
gene id XLOC_000335
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 28472199 ~ 28473413 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003080
GTCTGTTCAAGTTTAGTGTGCCGTGAAACCAAAAGTCAAAACGACTACAGTTTTTGCAGCCTCAACTGAAAATCCAGACTCCACCCAACTCTAAACCTCATGAGGTCAAAGAACTGACTGAATTCCTCACATCAAAAAAGATACCTACCCTTGGCCACAGTGGACGGAGTTGGCACATGGTGTCCCCATCCTTGATTGCTTGACTGAAATTCTTCATTTCCATACACAACTCTGCCCGCTGAGCCAGGAGCCTACCTATAGAGGGCTCTGTGAAGAAATAAAGATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003080 True 286 lncRNA 0.45 2 28472199 28473413

Neighbor

gene id symbol gene type direction distance location
XLOC_000334 psip1a coding upstream 276932 28089703 ~ 28195267 (+)
XLOC_000333 chst10 coding upstream 424957 28031697 ~ 28047242 (+)
XLOC_000332 sugt1 coding upstream 452157 27977297 ~ 28020042 (+)
XLOC_000331 dnajb14 coding upstream 577382 27867706 ~ 27894817 (+)
XLOC_000330 pspc1 coding upstream 611051 27808916 ~ 27861148 (+)
XLOC_000336 CU469541.1 coding downstream 430357 28903770 ~ 28904635 (+)
XLOC_000337 cbsa coding downstream 595236 29068649 ~ 29093562 (+)
XLOC_000338 cryaa coding downstream 623468 29096881 ~ 29100923 (+)
XLOC_000339 ankrd10a coding downstream 667471 29140884 ~ 29164911 (+)
XLOC_000340 BX908780.5 coding downstream 700782 29174195 ~ 29180648 (+)
XLOC_000327 NA non-coding upstream 1731050 26740115 ~ 26741149 (+)
XLOC_000325 NA non-coding upstream 1800989 26664689 ~ 26671210 (+)
XLOC_000323 AL954695.3 non-coding upstream 1887606 26577288 ~ 26584593 (+)
XLOC_000322 AL954695.2 non-coding upstream 1917360 26551034 ~ 26554839 (+)
XLOC_000308 NA non-coding upstream 2750497 25719653 ~ 25721702 (+)
XLOC_000346 BX908780.2 non-coding downstream 838114 29311527 ~ 29312559 (+)
XLOC_000347 CT573186.1 non-coding downstream 971039 29444452 ~ 29445719 (+)
XLOC_000348 CT573186.2 non-coding downstream 978052 29451465 ~ 29452733 (+)

Expression


Co-expression Network