G1416445


Basic Information

Item Value
gene id G1416445
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 6958788 ~ 6972229 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1619745
CACCAATAATAATCTCATCAATCGGGTAAcaacgtttattcaaccagtgggagGTTTGTAAATGCCCCCAGGAAAGTAAAACAaagaactcttcattgagacaatgatgAAACAGCAATCCGTGGGAGAGTTGTGgtggatattataaaataaggatctgctggagtccaagtcaaaccaagattctttatttctgagctcagagagaataacagagttacacagcgCAGTGTAGACAGTCTGAATTCCTGAAGCATTGGGTGATGAGCACATATCTTTATAGTTTCCTATTCCTGGGCGGGACTTTATTCATACAAGGACACAGGTGCAAATTGGTTTGCAACACAGGATGATACTCCCAAGAACAGGAGCTTATAATACATTTCACAAGGTTAGTCACATACTCAGTTATgtggacacacaaacaattaacattttccattacagagtctgaacattttcatttcattaaatcatcagtgggccaacaatgcaaatgtcaacaatggaactaatgcatcacatccaaatatcacttgattatctgtagtgctggaggaatgacacacCCAGATAAACACACAGAGTTTTAAAAAAGGACAATTTAAAACAAGGAACCTGATCTCCTTTATATTCAAACTGAAAGACTCCATATTCACTTCATGTTTTCTAATAGaaacaaacaaatatatgttTGAGTATACCCTGTACCATTTAATTTCAAATGGTAAAGACAGGTAAACACATTgtcagtcaacaatataagacaacgggagcactgtgtatgttctccGATGATTTTTAAGTCAATGTGAAGTGAAATATCAACATACACGCTAAGAGAAgtaatttctctctcctgtgtggattctctaaTGACGTTTAAGTGACTTATGAGTAATATGTTTTCCCACAGTCTGAGCTTTTCTAAGCATTCTCCTTTGTGTGCAGTCTAATgtgttctttcaggcttcctaaatgggcaaatggtttgcaccctgggaggagtggtacggcttctctcctgtgtgtattctctcatgtcgtttcaggtCCCCCGaatggttgaaacactttccacattgggagcaatggtaaggcttctctcccgtgtgtattctctcatgtagtTTCAGgtgtCCACTCTGGTTGAaaaactttccacattgggagcagtggtacggcttctctcctgtgtgtattctctcgtgttgttTCAGCATCCCCGACCgggtgaaacactttccacattgggagcagtggtacggcttttctcctgtgtgtattctctcgtgttgttTCAGCATCCCCGaatggttgaaacactttccacattgggagcagtggtaaggcttctctcctgtgtgtattctctcatgccgttTCAGCACCGCCGAATGGACGAAAGAcgttccacattgggagcagtggtaaggcttctcccctgtgtgtattctcttatgTTTTTTCAGTTGTGCTTTCTGTTTAAAACTCTTTTCACACTGGGAGCACTGGTGtcgtcttgctggtttggacgtccctggctctggttcctctgagtctggtctttctc

Function

NR:

description
zinc finger protein 501-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1619745 True 1573 lncRNA 0.42 3 6958788 6972229

Neighbor

gene id symbol gene type direction distance location
LOC110514651 LOC106595305 coding upstream 298010 6636106 ~ 6660778 (+)
LOC118940233 NA coding upstream 301814 6654467 ~ 6656974 (+)
LOC118940231 NA coding upstream 310620 6646607 ~ 6648168 (+)
LOC110514652 NA coding upstream 326742 6621171 ~ 6632046 (+)
LOC110511216 LOC106564015 coding upstream 363552 6586931 ~ 6595236 (+)
LOC118940246 NA coding downstream 393707 7365617 ~ 7381649 (+)
LOC110485353 LOC106596877 coding downstream 565062 7537291 ~ 7543177 (+)
LOC110485355 LOC106593569 coding downstream 574118 7546347 ~ 7561297 (+)
LOC110487504 LOC106593600 coding downstream 593921 7566150 ~ 7599621 (+)
LOC110513544 LOC106564138 coding downstream 711473 7683702 ~ 7856746 (+)
G1416446 NA non-coding upstream 23073 6834872 ~ 6935715 (+)
G1416440 NA non-coding upstream 155326 6741342 ~ 6803462 (+)
G1416459 NA non-coding upstream 175135 6750017 ~ 6783653 (+)
G1416453 NA non-coding upstream 204133 6724915 ~ 6754655 (+)
G1416451 NA non-coding upstream 238107 6719571 ~ 6720681 (+)
G1416520 NA non-coding downstream 28144 7000373 ~ 7036207 (+)
G1416536 LOC106564044 non-coding downstream 90472 7062701 ~ 7259416 (+)
G1416544 NA non-coding downstream 226521 7198750 ~ 7198996 (+)
G1416554 NA non-coding downstream 275399 7247628 ~ 7247903 (+)
G1416575 NA non-coding downstream 349654 7321883 ~ 7322451 (+)
G1416462 NA other upstream 189198 6752802 ~ 6769590 (+)
G1416452 NA other upstream 238394 6719787 ~ 6720394 (+)
G1416413 NA other upstream 308591 6618183 ~ 6650197 (+)
LOC118940005 LOC106593103 other upstream 433933 6523504 ~ 6578882 (+)
G1416180 LOC106594343 other upstream 741535 6216219 ~ 6217253 (+)
G1416559 NA other downstream 355826 7328055 ~ 7334299 (+)
G1417359 LOC106594003 other downstream 630526 7602755 ~ 7606668 (+)
G1417508 NA other downstream 725698 7697927 ~ 7698422 (+)
G1417561 NA other downstream 862873 7835102 ~ 7835589 (+)

Expression


Co-expression Network