G1416536 (LOC106564044)


Basic Information

Item Value
gene id G1416536
gene name LOC106564044
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 7062701 ~ 7259416 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1619867
tttctctccaaagctaactttcatcaaggttttatatggtctattggttcctctctaaagctaactttcatcaaggttttatatggtctatcggtttctctcttttcattggccgaatcctttttcagtgttatgatattcattacatccatatacactactctatcttcctgtcaactaacagaactctgctggttgtcctggtaacagataccagtgggcagatctatttatttgttcaaactgaactacagcacttactttgatgtgtcaaatctgatcctttcttctcttctcctcctctcacagttccactcagccctgttgttttcctgcagtccaccagcagcacagacaacctcttcatacccagcagtaaggtgttTCCGGGAGAGGCATGACACGGGGACTCCGGGAGAgaggaagggctagcgttgtcctggtaaccataaagaggagacacagacacataccattatggatgctgatgtcactgttgtcataaactgctttacagaaacacagcccagacccagatagagcaagctgtatgctagaccagacc

Function

NR:

description
PREDICTED: golgin subfamily A member 6-like protein 22

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1619867 True 565 lncRNA 0.44 2 7062701 7259416

Neighbor

gene id symbol gene type direction distance location
LOC110514651 LOC106595305 coding upstream 401923 6636106 ~ 6660778 (+)
LOC118940233 NA coding upstream 405727 6654467 ~ 6656974 (+)
LOC118940231 NA coding upstream 414533 6646607 ~ 6648168 (+)
LOC110514652 NA coding upstream 430655 6621171 ~ 6632046 (+)
LOC110511216 LOC106564015 coding upstream 467465 6586931 ~ 6595236 (+)
LOC118940246 NA coding downstream 106520 7365617 ~ 7381649 (+)
LOC110485353 LOC106596877 coding downstream 277875 7537291 ~ 7543177 (+)
LOC110485355 LOC106593569 coding downstream 286931 7546347 ~ 7561297 (+)
LOC110487504 LOC106593600 coding downstream 306734 7566150 ~ 7599621 (+)
LOC110513544 LOC106564138 coding downstream 424286 7683702 ~ 7856746 (+)
G1416520 NA non-coding upstream 26494 7000373 ~ 7036207 (+)
G1416509 NA non-coding upstream 47646 6943378 ~ 7015055 (+)
G1416515 NA non-coding upstream 48664 6967360 ~ 7014037 (+)
G1416511 NA non-coding upstream 90135 6947666 ~ 6972566 (+)
G1416445 NA non-coding upstream 90472 6958788 ~ 6972229 (+)
G1416575 NA non-coding downstream 62467 7321883 ~ 7322451 (+)
G1416578 NA non-coding downstream 65728 7325144 ~ 7325984 (+)
G1416580 NA non-coding downstream 104015 7363431 ~ 7363795 (+)
G1416593 NA non-coding downstream 104556 7363972 ~ 7364266 (+)
G1416462 NA other upstream 293111 6752802 ~ 6769590 (+)
G1416452 NA other upstream 342307 6719787 ~ 6720394 (+)
G1416413 NA other upstream 412504 6618183 ~ 6650197 (+)
LOC118940005 LOC106593103 other upstream 537846 6523504 ~ 6578882 (+)
G1416180 LOC106594343 other upstream 845448 6216219 ~ 6217253 (+)
G1416559 NA other downstream 68639 7328055 ~ 7334299 (+)
G1417359 LOC106594003 other downstream 343339 7602755 ~ 7606668 (+)
G1417508 NA other downstream 438511 7697927 ~ 7698422 (+)
G1417561 NA other downstream 575686 7835102 ~ 7835589 (+)

Expression


Co-expression Network