XLOC_003351 (ptbp1b)


Basic Information

Item Value
gene id XLOC_003351
gene name ptbp1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 14321113 ~ 14342507 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006562
CACCGCTGAGGCTGCACTCAACGCGTTCCGCCATTTTGTAGCGCTTTAAGAAAACTCAGCCAAGCAACAAAGTTGCGGATCAGAGCTGTTGTTCCTCGGTGTGCAATGGACGGCCGCCTAGAGACTGAATTGTATCCTATGGGATCAAGTTATGCAGAATTAGACGTTGTTCATGATATTGCAGTTGGTACAAAGAGAGGATCTGACGAATTGTTCTCCTGTGTTACCAGTGGGCCTTATATCATGAGCTCAGCAGCCAACGGCAACGACAGCAAGAAATTCAAAGGTGACATTAGAAGTCCTGCCGTCCCGTCCAGAGTTATACATGTTCGCAAGCTGCCCAATGACATCAACGAAGCAGAGGTCATTGCCCTTGGTCTCCCATTTGGGAAAGTGACCAATCTGCTTATGCTGAAGGGAAAGAACCAGGCATTTTTGGAAATGAATTCTGAAGAAGCAGCTCAGACGATGGTTACTTACTACTCCTCTGTAACACCTGTCATCAGAAATCATCCCATCTTCATGCAATACTCCAACCACAAAGAGCTGAAAACAGACAATTCACCAAACCAAGTGAGGGCCCAGGCAGCTTTGCAGGCAGTGAATGCTGTCCAGACAGGTAGCTTGACTCTAGGTGGTGTTGACCCATCTGGTATGACTGGCCCCAGTCCTGTTCTGAGGGTCATCGTTGAAAATCTTTTCTACCCCGTGACCTTGGATGTCTTGCACCAGATTTTCTCCAAGTTTGGCACAGTGCTGAAAGTGATCACGTttaccaaaaacaatcaatttcaaGCTCTCCTCCAGTTCACAGATGGTCTGACTGCACAACATGCCAAGCTGGCTCTAGATGGCCAGAACATCTACAATGGCTGCTGCACCCTGCGAATCAGCTTTTCCAAACTTACCAGCTTAAACGTCAAATACAATAATGACAAGAGCCGTGACTACACTCGCCCTGACCTGCCCACAGGGGACAGCCAGCCTGCACTTGAACATCACGCTGTGGCTGCAGCCTTTGCTGCTCCTGGGATCATCTCTGCTGCACCATACGCAAGCGCACATGCCTTCCCTCCAGCTTTTGCTATTCAGCAGGCTGGATTGACAATACCTGGTGTTCCTGGAGCTCTCGCCTCACTGACCATTCCCGGGGCAGCAGCGGCTGCGGCAGCTGCAAGTAGACTGGGTTTTCCAACCCTCACTGGCACACATTGCGTTATGCTGGTCAGCAACCTGAACCCTGAGAGAGTTACGCCCCACTGCCTCTTTATTCTCTTCGGAGTATATGGGGATGTATTAAGGGTGAAAATTATGTTCAACAAAAAGGAGAACGCTCTCATACAGATGTCTGATGGAACACAGGCTCAGCTTGCAATGAGTCATCTAAATGGACAGAAGTTATATGGCAGGCCCCTGCGCATCACACTGTCCAAACATACGACTGTTCAGATGCCACGCGAGGGACATGAGGACCAGGGTCTCACCAAAGACTACAGTAACTCTCCACTCCATCGCTTCAAGAAACCAGGCTCCAAAAACTACTCCAACATCTTTCCTCCTTCATCTACTCTGCACCTGTCTAATATCCCacccTCTGTTGTTGAGGATGACCTTAAGCTGCTCTTTGGTAGCAGTGGTGCTCTGGTCAAGAACTTTAAGTTCTTTCAAAAAGATCGCAAGATGGCTCTGATTCAAATGAGTTCAGTGGAGGAAGCAATCGAGTCTCTCATCCAGTTCCACAACCACGATCTTGGAGAAAACCACCATCTTAGGGTTTCCTTTTCCAAGTCCACTATTTGAGACAAATGTGGTCTAGAAGGGGCTGGAGTGGCCAGTCATTTTAAACCCTAACAAGTCTTAATCACAAAGCTCACTTCCATCATtccattgttttatttaagaggcattttagttgatttttacatattgttttacattttaaatcactTGTGTTATTGCTTTGGCCTGAGAAGTTACATTTTCACTCCATCTATTAATTTAAGCCTGTTTGAGGCTTGTAAAAATAATCTCTGTAGGAGCGGAGAAAAACCACTAAAGGCCTTAGATTATATTTGTACCATGTGTGCCTTATTGTTTCAGATCTTCAGAACCTCAGTCCAACATCTGCAACTGATGTGTGCAAATCTGTAGTTTACTGTCTGTTTTGTGCCCTCAGGGCTGAACATTCATACTCGTATGAGACATGGGTAATTTCATCAGGCTGATGGTACAGGCCTTAAATTCTCCGCCTCTGTGCTATGTATTTTCAATTAGGGTTGCACTCAGCATATCCTCAAGCTTAGCATTTATACTGTATCTTGACACTTAGAAAGTTTACAGGCATTTTTTTCTGCTTCAAAATTATGCAATCATTTGTGTTAAATCCAATAGTGTTGTGtagatttgtattgtttttatattgtggGCCATTGCATGTTGGCTGTGGTCAATGGACCATATCTATTTTCCGTTTGTCCTGTATTTTGTGTTGATGTTTAGCATTGGGCTTTGTGTTATTGTGATATAGTGGATTATTTAAGCTATACTACTTTAATGCCCTATGTATTCATGTACGTTTGTGTGTACACTACAGCTTGATACCAAAGCCTTTCCTCCAGTACATTCGTAAGGGATATCCAGACACCTTTTAGACTCATGACATTTACAAGCTTGTCCTCAACTAATGAACAGATGTTGGCTTCTCTTTAGAGAATGTGTGTGCgatagaaaaaaaattcaactgaTTTTGGAGAAGCACCACATATTACTGATAATCTGCACACTTGTTTGTTCTTAGCATATGAGTCTTAACATTTTGGGAACAAATGACATCTTTAAATTGGGGTTGAGCATTTATTGTCCACAATGGCCTTCAGTGAGATCTGTAATATGGGTCTGAGCCTTTATTTTCCTGATATTTGTATTTGAAATCTCACAAGTGCCTTTTGAAAATCATGTATTGGTTTATTTTCTTGATATGTTAAGTTTGCATTGTCTTTGAAAAGATGTTTTATGATGGACTAAATTTGGTAAACCTCAGaacatgcataaaaacaaatttaatttgtttatgttataTTCCAGACAATATTAATTGTTAACTATTTTAGCTGTGGGTTAGGTTCTGTGAAAATAGTTTGTTTCTTTTTGCTATGCGTTTTATTTTGGgaccaatatataaaaaagaggTGGCGCTCTAGAGAAATCGAAATGCTTGTTGGATGTAGATAGCAAGTTGCTTCATCATGTTTTGAAAACGTTGATTCATTATAGTGCTAGATAAAACCTGATTATGCATTCTTGCACAACATTATAAACCCTCAGTTTCTGACATTTGCCTTAGATTATAAAGTGCTTTTTCATATAGTTGACATGAGGTGTAAATACTATTTTTGTATTACAATGTTAAAAGTTATGGGGTTTTATATCCACAAAAGCGTATATTTTGATACAGTTATGGACCATCATCATGcagaaaagagaaagaaataatTTCATTATAAAACGGTTTAAATCAGGATTAACATTACACTTTTTTGTTTTCTCTCCATACCTATCTTGTTCTTGTGACATTCCTAGCTGTATTTTTCTTTGCCCTCAATAAATACTTGTTTACTGA
>TCONS_00006563
GCTTTAAGAAAACTCAGCCAAGCAACAAAGTTGCGGATCAGAGCTGTTGTTCCTCGGTGTGCAATGGACGGCGTTGTTCATGATATTGCAGTTGGTACAAAGAGAGGATCTGACGAATTGTTCTCCTGTGTTACCAGTGGGCCTTATATCATGAGCTCAGCAGCCAACGGCAACGACAGCAAGAAATTCAAAGGTGACATTAGAAGTCCTGCCGTCCCGTCCAGAGTTATACATGTTCGCAAGCTGCCCAATGACATCAACGAAGCAGAGGTCATTGCCCTTGGTCTCCCATTTGGGAAAGTGACCAATCTGCTTATGCTGAAGGGAAAGAACCAGGCATT
>TCONS_00006564
AGAGCTGTTGTTCCTCGGTGTGCAATGGACGGCCGCCTAGAGACTGAATTGTATCCTATGGGATCAAGTTATGCAGAATTAGAACCTGGATTAAACCAGACAGACATGCATGACATGCAGCATGTAAGATGATACACAAAAACTGAAACCACACCCCAGCGTTGTTCATGATATTGCAGTTGGTACAAAGAGAGGATCTGACGAATTGTTCTCCTGTGTTACCAGTGGGCCTTATATCATGAGCTCAGCAGCCAACGGCAACGACAGCAAGAAATTCAAAGGTGACATTAGAAGTCCTGCCGTCCCGTCCA
>TCONS_00006566
CTCTGCTGCACCATACGCAAGCGCACATGCCTTCCCTCCAGCTTTTGCTATTCAGCAGGCTGGATTGACAATACCTGGTGTTCCTGGAGCTCTCGCCTCACTGACCATTCCCGGGGCAGCAGCGGCTGCGGCAGCTGCAAGTAGACTGGGTTTTCCAACCCTCACTGGCACACATTGCGTTATGCTGGTCAGCAACCTGAACCCTGAGAGAGTTACGCCCCACTGCCTCTTTATTCTCTTCGCAATGAGTCATCTAAATGGACAGAAGTTATATGGCAGGCCCCTGCGCATCACACTGTCCAAACATACGACTGTTCAGATGCCACGCGAGGGACATGAGGACCAGGGTCTCACCAAAGACTACAGTAACTCTCCACTCCATCGCTTCAAGAAACCAGGCTCCAAAAACTACTCCAACATCTTTCCTCCTTCATCTACTCTGCACCTGTCTAATATCCCacccTCTGTTGTTGAGGATGACCTTAAGCTGCTCTTTGGTAGCAGTGGTGCTCTGGTCAAGAACTTTAAGTTCTTTCAAAAAGATCGCAAGATGGCTCTGATTCAAATGAGTTCAGTGGAGGAAGCAATCGAGTCTCTCATCCAGTTCCACAACCACGATCTTGGAGAAAACCACCATCTTAGGGTTTCCTTTTCCAAGTCCACTATTTGAGACAAATGTGGTCTAGAAGGGGCTGGAGTGGCCAGTCATTTTAAACCCTAACAAGTCTTAATCACAAAGCTCACTTCCATCATtccattgtttta
>TCONS_00006565
CTCTGCTGCACCATACGCAAGCGCACATGCCTTCCCTCCAGCTTTTGCTATTCAGCAGGCTGGATTGACAATACCTGGTGTTCCTGGAGCTCTCGCCTCACTGACCATTCCCGGGGCAGCAGCGGCTGCGGCAGCTGCAAGTAGACTGGGTTTTCCAACCCTCACTGGCACACATTGCGTTATGCTGGTCAGCAACCTGAACCCTGAGGAGTATATGGGGATGTATTAAGGGTGAAAATTATGTTCAACAAAAAGGAGAACGCTCTCATACAGATGTCTGATGGAACACAGGCTCAGCTTGCAATGAGTCATCTAAATGGACAGAAGTTATATGGCAGGCCCCTGCGCATCACACTGTCCAAACATACGACTGTTCAGATGCCACGCGAGGGACATGAGGACCAGGGTCTCACCAAAGACTACAGTAACTCTCCACTCCATCGCTTCAAGAAACCAGGCTCCAAAAACTACTCCAACATCTTTCCTCCTTCATCTACTCTGCACCTGTCTAATATCCCacccTCTGTTGTTGAGGATGACCTTAAGCTGCTCTTTGGTAGCAGTGGTGCTCTGGTCAAGAACTTTAAGTTCTTTCAAAAAGATCGCAAGATGGCTCTGATTCAAATGAGTTCAGTGGAGGAAGCAATCGAGTCTCTCATCCAGTTCCACAACCACGATCTTGGAGAAAACCACCATCTTAGGGTTTCCTTTTCCAAGTCCACTATTTGAGACAAATGTGGTCTAGAAGGGGCTGGAGTGGCCAGTCATTTTAAACCCTAACAAGTCTTAATCACAAAGCTCACTTCCATCATtccattgtttta
>TCONS_00006567
CTTTCTTTTATTTCTCTCCCTCCCTGTTCCCCTCATCCCAtggctctttttttatttttgaaacctTGTTCTCTTTTGCCATCTGGCTGCACGCACCATATGTCTACTCATTTGTTGTCACTGTACAAACAATTACATCATTATTACGCAATCACACACATcaacattacttaaaataaacacacacacacatctgtcttCCACACCCCCATCCCACCCTACCCCAATCCTACCCCTCTTTCTGCTCCAATCCATTAACCATCTTCATGATCCAACCATCGTTTTTCGCCATTTCCCGTGGAACTGCCTCGCTGCCTTGGATATGTTGAACCTCCACTCTGCCTCCGATCTTTACCTTCTCTTCCTCCTCCGCTGCCCCCCTCTGCTGTCCTTTAAAGAGAGTTACGCCCCACTGCCTCTTTATTCTCTTCGGAGTATATGGGGATGTATTAAGGGTGAAAATTATGTTCAACAAAAAGGAGAACGCTCTCATACAGATGTCTGATGGAACACAGGCTCAGCTTGCAATGAGTCATCTAAATGGACAGAAGTTATATGGCAGGCCCCTGCGCATCACACTGTCCAAACATACGACTGTTCAGATGCCACGCGAGGGACATGAGGACCAGGGTCTCACCAAAGACTACAGTAACTCTCCACTCCATCGCTTCAAGAAACCAGGCTCCAAAAACTACTCCAACATCTTTCCTCCTTCATCTACTCTGCACCTGTCTAATATCCCacccTCTGTTGTTGAGGATGACCTTAAGCTGCTCTTTGGTAGCAGTGGTGCTCTGGTCA

Function

symbol description
ptbp1b Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing and regulation of cell differentiation. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be active in nucleus. Is expressed in several structures, including EVL; axis; mesoderm; nervous system; and pronephric duct. Orthologous to human PTBP1 (polypyrimidine tract binding protein 1).

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0006417 regulation of translation biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:0048025 negative regulation of mRNA splicing, via spliceosome biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9796 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing and regulation of cell differentiation. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be active in nucleus. Is expressed in several structures, including EVL; axis; mesoderm; nervous system; and pronephric duct. Orthologous to human PTBP1 (polypyrimidine tract binding protein 1).

Ensembl:

ensembl_id ENSDARG00000031907

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006562 False 3619 mRNA 0.41 16 14321113 14342507
TCONS_00006563 False 341 mRNA 0.48 5 14321155 14328326
TCONS_00006564 False 311 mRNA 0.46 6 14321194 14327105
TCONS_00006566 False 765 mRNA 0.49 6 14333441 14340783
TCONS_00006565 False 824 nonsense_mediated_decay 0.48 6 14333441 14340783
TCONS_00006567 True 801 lncRNA 0.46 4 14334243 14338679

Neighbor

gene id symbol gene type direction distance location
XLOC_003350 si:ch211-262i1.5 coding upstream 2026 14312260 ~ 14319087 (+)
XLOC_003349 si:ch211-262i1.4 coding upstream 20860 14295011 ~ 14300253 (+)
XLOC_003348 si:ch211-262i1.3 coding upstream 28087 14280598 ~ 14293026 (+)
XLOC_003347 palm1a coding upstream 53258 14199802 ~ 14267855 (+)
XLOC_003346 plppr3b coding upstream 159138 14147913 ~ 14161975 (+)
XLOC_003352 si:ch211-262i1.6 coding downstream 938 14343445 ~ 14346112 (+)
XLOC_003353 BX571942.1 coding downstream 88766 14431273 ~ 14640317 (+)
XLOC_003354 si:ch73-60h1.1 coding downstream 333729 14676236 ~ 14751380 (+)
XLOC_003355 CU019562.3 coding downstream 519779 14862286 ~ 14863542 (+)
XLOC_003356 CU019562.2 coding downstream 560202 14902709 ~ 14904977 (+)
XLOC_003318 CR450764.6 misc upstream 1609117 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 1626850 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 1635514 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 1641085 12679732 ~ 12680028 (+)
XLOC_003314 CR450764.9 misc upstream 1697262 12623555 ~ 12623851 (+)
XLOC_003369 CR854846.2 misc downstream 1780279 16122786 ~ 16123082 (+)
XLOC_003344 CT956066.1 non-coding upstream 238936 14081540 ~ 14082177 (+)
XLOC_003342 AL928649.1 non-coding upstream 456149 13864846 ~ 13864964 (+)
XLOC_003341 CR555295.2 non-coding upstream 503429 13817569 ~ 13817684 (+)
XLOC_003332 NA non-coding upstream 1126516 13193723 ~ 13194597 (+)
XLOC_003329 CR847923.1 non-coding upstream 1168728 13151919 ~ 13152385 (+)
XLOC_003358 CR550302.2 non-coding downstream 674678 15017185 ~ 15018524 (+)
XLOC_003359 NA non-coding downstream 996837 15339344 ~ 15341413 (+)

Expression


Co-expression Network