XLOC_003352 (si:ch211-262i1.6)


Basic Information

Item Value
gene id XLOC_003352
gene name si:ch211-262i1.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 14343445 ~ 14346112 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006568
ATTTACCGTAACACTATGCACGCTGTCGTCTTTAATAATCAGGAAGAGGAACTGGACTGGTGGCGAAATCGAACTTCTCTGAAGAAAACCGGTGTTCAGAAGAAGTACGGGCTCCTTTCAAACTATGATGACACCATGGAGATGGCCCATCTTGAAAGTGATGAGGATGACACTACTGTCTACGAAGCCAAATCTTTGAGAAGatgaATCTCTGGATGTGTTTGACACTGCAGGGAAATGTGATCCCAAATGTGAGACAATCCTGTTATCTCCACCAAAATGGTTGCTGAATTGTTGCTGATTTCAACGACCGTGAGAGGACCTAGTCCGGATTCTTGGATGCCTTTTTTCCAAGACTTAAATGGAACATGTGGGTTTAAATTAGTCCAATACATTTTAAACTGACATGACCAAAACAATCTTCTTTAAAAGTTTTTCAGAAGGTCATACATTGTTCTGATGTGGGTTATAAGACAATACGGTCAGCAGAGGATCAAAACTGTGTTTTGTGCCAAAGTTACTTATGCATCATTTATTTAAGGGGTTTGAACTCTTGACTGAGTTGATGTGTAATAAtcaatattgttaaaaaatgccCCTCATTTCTCATTCAaaaacactgaaaaccctaaaaGTTGTTTGCTAATTCATAAGACTATTATTGTTTAGTGtgtgttaattttttattgttttaggtATACCTTCATATTATGATAgacattttgctttttaaaaacacatttttttctctct
>TCONS_00008576
ATTTACCGTAACACTATGCACGCTGTCGTCTTTAATAATCAGGAAGAGGAACTGGACTGGTGGCGAAATCGAACTTCGTATGTGTTTGTGGCTCGTCGCTTtcctttaaaaacacaaacctaaGCTATTATGACACTTTTAAGGTTTATACCTCTGCTGTTGACTTTTTGGGCTGTTTCTTTTGCTGATGACAATGAACATAAATCTGGCAGTACTAAACCACCCACTTCCACTATTAGCAACAGTACCGAAAAGTATAATTCCAATAACGCTAGTGATGTGGCGATGATTAATAGGGCTCTGTATGTTTTGATCGGGATAACGGCAATTGGAGTCCTGTATTTCTTAGTGAGAGCCGTCCGGTAAGTGATTTGGAAATCTTGGTTCATGTCTAATGACGTGTTGTTTAAACTCTCCATATGTTTAGTATATCATACATATGTTAAGTTCTAGACGAATAGAAACGTTTCTTTTTATGATGGGAAGCTATTGCACTGTTACGCTTTTTTTGTCTTTGAgcaataaattatgtaaatagtTTAGTTTGAACAACATTAAACTTCAGATGTAAAGTTTCTAGCATTGCTAACAGATAAAGGCGAGTTCCTGACAAATGTAAGTTATAAATGTTGGCAATTAAACTGTGTTTAGACAGATGAATAGCAGGTTGTCaacactgaggtaaagttggttttatattcgttcatatttgaacagtgacaacttgtgacattgTTTACCACGCTAACGTTACTTTTAAATTTAGGTCTGAAATAGCATCCAAGTATGACttcaaacaacattagcactatttgatCGGCTGCTAATGTGATTTTCCCTGTCAAGAATGTGCAAACAACACTTTTCAGAATTCATATTAAGGAAAAAACCATAAGGTGCGAATATAAAACGAATTTTACCCCATCACACTGGTTTGTGTGCTTTATGACCAGCCGTACAACTTtgaacattaatattattttcctGACAGGTGTGTAACTTTTTCTTTGCTAAATTACACACAGCTTAatgttaacaacaacaacaacaacaatcataCAGGCTGCTTTTATGCTACATTTTCTTTTGACTGCCATATAGTTTTGAAATGgaatcatttttattcattttaaactttTCCTTTTAAAATCTCTAATGTTCTCTTATTCCAGTCTGAAGAAAACCGGTGTTCAGAAGAAGTACGGGCTCCTTTCAAACTATGATGACACCATGGAGATGGCCCATCTTGAAAGTGATGAGGATGACACTACTGTCTACGAAGCCAAATCTTTGAGAAGGTTTTACATTCTAGATTGTTCTTccatatatttcaaatatagcAGAAACTGCTCAACTTTAGACTTTGGGCTATAATGCTGGAAATCAATACTTCAGGCAGCTTGTTGTCTAaccttttttgtcttttttttaatagatgaATCTCTGGATGTGTTTGACACTGCAGGGAAATGTGATCCCAAATGTGAGACAATCCTGTTATCTCCACCAAAATGGTTGCTGAATTGTTGCTGATTTCAACGACCGTGAGAGGACCTAGTCCGGATTCTTGGATGCCTTTTTTCCAAGACTTAAATGGAACATGTGGGTTTAAATTAGTCCAATACATTTTAAACTGACATGACCAAAACAATCTTCTTTAAAAGTTTTTCAGAAGGTCATACATTGTTCTGATGTGGGTTATAAGACAATACGGTCAGCAGAGGATCAAAACTGTGTTTTGTGCCAAAGTTACTTATGCATCATTTATTTAAGGGGTTTGAACTCTTGACTGAGTTGATGTGTAATAAtcaatattgttaaaaaatgccCCTCATTTCTCATTCAaaaacactgaaaaccctaaaaGTTGTTTGCTAATTCATAAGACTATTATTGTTTAGTGtgtgttaattttttattgttttaggtATACCTTCATATTATGATAgacattttgctttttaaaaacacatttttttctctctttttgttctttcttgctttctttctttcactgTACCAGAACTACATTGGGTATTAATTTTATTAGGATTTCTGGAGTAAGCGTGACCAATGAATGCATTTTTTGTGTATAAATTTGCCAAATACCAGCCTATTTAAGAGAAGCACTTTGAGTTTTAGGGTTTAGACACTAAAGCACCAAAACAGCCAGTCATGATATTTTTGACTTGGCGACACTCCTGACCATTTCACAGTTGGTTTGATACTGAAGATTTGATAATTATGAGGGTTTTTGTCTTTCGAGATTAAGCATTCCCACGTTTTTATATTCCAAGCATAAACGCTTAGTATACATTTAAAAGTATTGTTCCAATTGGATTCATAAGAAAGCTGCATGCATTTTTCTCATGTGTGTTGTAAGGGTGACAAATGAATGTGCTGTACAGCAAGCAATCTGCATACATGGATCAAACAACATCAGTTTCAATTTTGCAACTTGATAAATTAAGGGTGATTGAGGGCATTTATGATGGTTTCTTTAAATACATTTACTGGCCTATTAATAGTGTCAAATTGAAATGCATGAAGCATCACTGTATCAATATTTAATGTACATAATTCAAGTGATTCCTAAAGTGTGCCTTTCATCCCTTTTGACTGGATGTGTTTTTGGCTTTTTGTAATTAAATTCTTTTCGCTATTTTCA
>TCONS_00006569
TTTACCGTAACACTATGCACGCTGTCGTCTTTAATAATCAGGAAGAGGAACTGGACTGGTGGCGAAATCGAACTTCGTATGTGTTTGTGGCTCGTCGCTTtcctttaaaaacacaaacctaaGCTATTATGACACTTTTAAGGTTTATACCTCTGCTGTTGACTTTTTGGGCTGTTTCTTTTGCTGATGACAATGAACATAAATCTGGCAGTACTAAACCACCCACTTCCACTATTAGCAACAGTACCGAAAAGTATAATTCCAATAACGCTAGTGATGTGGCGATGATTAATAGGGCTCTGTATGTTTTGATCGGGATAACGGCAATTGGAGTCCTGTATTTCTTAGTGAGAGCCGTCCGTCTGAAGAAAACCGGTGTTCAGAAGAAGTACGGGCTCCTTTCAAACTATGATGACACCATGGAGATGGCCCATCTTGAAAGTGATGAGGATGACACTACTGTCTACGAAGCCAAATCTTTGAGAAGatgaATCTCTGGATGTGTTTGACACTGCAGGGAAATGTGATCCCAAATGTGAGACAATCCTGTTATCTCCACCAAAATGGTTGCTGAATTGTTGCTGATTTCAACGACCGTGAGAGGACCTAGTCCGGATTCTTGGATGCCTTTTTTCCAAGACTTAAATGGAACATGTGGGTTTAAATTAGTCCAATACATTTTAAACTGACATGACCAAAACAATCTTCTTTAAAAGTTTTTCAGAAGGTCATACATTGTTCTGATGTGGGTTATAAGACAATACGGTCAGCAGAGGATCAAAACTGTGTTTTGTGCCAAAGTTACTTATGCATCATTTATTTAAGGGGTTTGAACTCTTGACTGAGTTGATGTGTAATAAtcaatattgttaaaaaatgccCCTCATTTCTCATTCAaaaacactgaaaaccctaaaaGTTGTTTGCTAATTCATAAGACTATTATTGTTTAGTGtgtgttaattttttattgttttaggtATACCTTCATATTATGATAgacattttgctttttaaaaacacatttttttctctctttttgttctttcttgctttctttctttcactgTACCAGAACTACATTGGGTATTAATTTTATTAGGATTTCTGGAGTAAGCGTGACCAATGAATGCATTTTTTGTGTATAAATTTGCCAAATACCAGCCTATTTAAGAGAAGCACTTTGAGTTTTAGGGTTTAGACACTAAAGCACCAAAACAGCCAGTCATGATATTTTTGACTTGGCGACACTCCTGACCATTTCACAGTTGGTTTGATACTGAAGATTTGATAATTATGAGGGTTTTTGTCTTTCGAGATTAAGCATTCCCACGTTTTTATATTCCAAGCATAAACGCTTAGTATACATTTAAAAGTATTGTTCCAATTGGATTCATAAGAAAGCTGCATGCATTTTTCTCATGTGTGTTGTAAGGGTGACAAATGAATGTGCTGTACAGCAAGCAATCTGCATACATGGATCAAACAACATCAGTTTCAATTTTGCAACTTGATAAATTAAGGGTGATTGAGGGCATTTATGATGGTTTCTTTAAATACATTTACTGGCCTATTAATAGTGTCAAATTGAAATGCATGAAGCATCACTGTATCAATATTTAATGTACATAATTCAAGTGATTCCTAAAGTGTGCCTTTCATCCCTTTTGACTGGATGTGTTTTTGGCTTTTTGTAATTAAATTCTTTTCGCTATTTTCA
>TCONS_00006570
ctttTCCTTTTAAAATCTCTAATGTTCTCTTATTCCAGTCTGAAGAAAACCGGTGTTCAGAAGAAGTACGGGCTCCTTTCAAACTATGATGACACCATGGAGATGGCCCATCTTGAAAGTGATGAGGATGACACTACTGTCTACGAAGCCAAATCTTTGAGAAGatgaATCTCTGGATGTGTTTGACACTGCAGGGAAATGTGATCCCAAATGTGAGACAATCCTGTTATCTCCACCAAAATGGTTGCTGAATTGTTGCTGATTTCAACGACCGTGAGAGGACCTAGTCCGGATTCTTGGATGCCTTTTTTCCAAGACTTAAATGGAACATGTGGGTTTAAATTAGTCCAATACATTTTAAACTGACATGACCAAAACAATCTTCTTTAAAAGTTTTTCAGAAGGTCATACATTGTTCTGATG

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6242 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular region. Orthologous to human FAM174C (family with sequence similarity 174 member C).

Ensembl:

ensembl_id ENSDARG00000101341

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006568 False 753 mRNA 0.37 3 14343445 14345429
TCONS_00008576 False 2668 lncRNA 0.35 1 14343445 14346112
TCONS_00006569 False 1720 mRNA 0.36 3 14343446 14346112
TCONS_00006570 True 423 lncRNA 0.39 2 14344579 14345138

Neighbor

gene id symbol gene type direction distance location
XLOC_003351 ptbp1b coding upstream 938 14321113 ~ 14342507 (+)
XLOC_003350 si:ch211-262i1.5 coding upstream 24358 14312260 ~ 14319087 (+)
XLOC_003349 si:ch211-262i1.4 coding upstream 43192 14295011 ~ 14300253 (+)
XLOC_003348 si:ch211-262i1.3 coding upstream 50419 14280598 ~ 14293026 (+)
XLOC_003347 palm1a coding upstream 75590 14199802 ~ 14267855 (+)
XLOC_003353 BX571942.1 coding downstream 85161 14431273 ~ 14640317 (+)
XLOC_003354 si:ch73-60h1.1 coding downstream 330124 14676236 ~ 14751380 (+)
XLOC_003355 CU019562.3 coding downstream 516174 14862286 ~ 14863542 (+)
XLOC_003356 CU019562.2 coding downstream 556597 14902709 ~ 14904977 (+)
XLOC_003357 CR550302.3 coding downstream 591792 14937904 ~ 14970911 (+)
XLOC_003318 CR450764.6 misc upstream 1631449 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 1649182 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 1657846 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 1663417 12679732 ~ 12680028 (+)
XLOC_003314 CR450764.9 misc upstream 1719594 12623555 ~ 12623851 (+)
XLOC_003369 CR854846.2 misc downstream 1776674 16122786 ~ 16123082 (+)
XLOC_003344 CT956066.1 non-coding upstream 261268 14081540 ~ 14082177 (+)
XLOC_003342 AL928649.1 non-coding upstream 478481 13864846 ~ 13864964 (+)
XLOC_003341 CR555295.2 non-coding upstream 525761 13817569 ~ 13817684 (+)
XLOC_003332 NA non-coding upstream 1148848 13193723 ~ 13194597 (+)
XLOC_003329 CR847923.1 non-coding upstream 1191060 13151919 ~ 13152385 (+)
XLOC_003358 CR550302.2 non-coding downstream 671073 15017185 ~ 15018524 (+)
XLOC_003359 NA non-coding downstream 993232 15339344 ~ 15341413 (+)

Expression


Co-expression Network