G1418359 (LOC106591926)


Basic Information

Item Value
gene id G1418359
gene name LOC106591926
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 9545525 ~ 9546046 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1622455
CTGAAACGCTTTCCACACtgtgagcagtggtaaggcttctcccctgtgtgagttATCTGGTGTGTCTTCAGGCTGTGTAACCAactgaaactctttccacactgagagcagtggtaaggcttctgtCCTGTGTGAGTTCTCTGGTGTGTCTTTAGTTGGTTCGACTGACCGAAACACTTCCCACAAACAGAGCAGTggtatggcttctctcctgtgtgagttctCTGGTGCGTCTTGAGTTTGCTTGGTGTTtgaaatctcttcccacattgaccacatgAGTACACCTTCCTCCTTTTTTGAGTCTGTTTTGATTTGAGGTGAGTTGGACAAATAAAGCTGCCTCTGCAATCTGAGCAGGGGTGGGGTCTACAAGTGTGCCTTCTCAACTCCTCTGGATCATAGAAACTAGTGTAGCAGTCCATGCAGTGGTGATGTTTCTGTCTTGAGTTCCTCCGTCTGTGTCGTTTATGGTTTCCTGATGCTGTGGAACTGTGCTCACTGTCTGAACCTGGGTTGGAG

Function

NR:

description
oocyte zinc finger protein XlCOF6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1622455 True 522 lncRNA 0.48 1 9545525 9546046

Neighbor

gene id symbol gene type direction distance location
LOC110510627 LOC106593081 coding upstream 89026 9304567 ~ 9515031 (+)
LOC110487204 LOC106593073 coding upstream 249551 9281428 ~ 9295974 (+)
LOC110494875 LOC106586284 coding upstream 271552 9260658 ~ 9273973 (+)
LOC110485387 LOC106593109 coding upstream 297800 9234394 ~ 9247725 (+)
LOC110513772 LOC106593162 coding upstream 325833 9152136 ~ 9219692 (+)
LOC110493376 LOC106564189 coding downstream 35563 9581609 ~ 9592897 (+)
LOC110510389 LOC106592846 coding downstream 54288 9600334 ~ 9685183 (+)
mvb12a LOC106564207 coding downstream 201262 9747308 ~ 9772113 (+)
LOC110518985 LOC106593960 coding downstream 229433 9775479 ~ 9780712 (+)
LOC110517298 LOC106564086 coding downstream 239747 9785793 ~ 9804783 (+)
G1418352 NA non-coding upstream 8447 9536793 ~ 9537078 (+)
G1418297 NA non-coding upstream 32481 9368803 ~ 9513044 (+)
G1418296 NA non-coding upstream 33125 9368181 ~ 9512400 (+)
G1418122 NA non-coding upstream 34202 9470396 ~ 9511323 (+)
G1418360 NA non-coding downstream 3818 9549864 ~ 9550087 (+)
G1418363 NA non-coding downstream 5582 9551628 ~ 9551876 (+)
G1418367 NA non-coding downstream 9549 9555595 ~ 9568379 (+)
G1418391 NA non-coding downstream 47729 9593775 ~ 9594192 (+)
LOC110519048 LOC106593387 other upstream 436310 9086192 ~ 9109227 (+)
LOC110485368 LOC105027472 other upstream 754804 8761682 ~ 8790721 (+)
G1418488 LOC106564225 other downstream 392427 9938473 ~ 9939331 (+)
G1418476 LOC106592804 other downstream 486801 10032847 ~ 10034985 (+)
G1418503 NA other downstream 490919 10036965 ~ 10057136 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G356301 NA non-coding CI01000147 null 130401 ~ 130940 (-)