G1418415


Basic Information

Item Value
gene id G1418415
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 9871082 ~ 9872874 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1622523
TGAGCGGgctgtgtgtgttatcatgtttgCGTCCcaaaagggcaccctattcccttcatatagtgcactacttgtgtcCAGGACCCATGGGGATCTGATCAAaggtggtgcactatatagggagtagagtgccatttgggacgtatacCCTGAGATGGGTTGAGTTTCTCTCCGGACAGCGGGATGAACACCGGGGTCACACCCCAACACTATAAAGAGGcgcccttccttccttccttccttctcacTCTCCTTGGTCTTTGTGACATCACTGACTTGACACAAGTTGAAAGTGTAAAAGCTTGAACTCCATTTTTTTCAGTCATGTCATTTCAGTCATGATTCATTtcaagaaaggagggagagagggaagaaaggaggGAAAGCAGGAAGGATGAgtgaagaaaggagggagagagaggacggaagGAGGGAAAGCAGGATAAAGAGGAAGGATGAgtgaagaaaggagggagagaggggacggaagagaggaagggagggggggggtacaTTTTAAAGGTGTTGGAATGTGGCTCTTGCCTTACAGCTCTGACCTGTAAATGAACACACGCCACAgattatacacatatatataaatagatgcagaaatatatattatatacgaTGAAAAGTCCCTAAAAATAATTGGATGATGTTGTTGGGAGGGAGAATGACTTATCTGCCTTGTGCTCAATTCCCTTTTGGTTTTTTAGAGAAGTGACTGTAAGAAAAACAACTTTTTTATGATGCTATAAAAAAAATAGTTTGTCTTGTTCATAACCTCCTTTCTCTCATCCTGTTTTTCTCGGTATCAAGTTCAGATATGCAAGAGTTTTAAAGGCCTCTGTTTTTATTTAaatatcaaatcctttctgggtaacaattaggtACGTTACTGTGATTTTGTTTTCAGTTGAAATGGcccaaaataaacaaaaatatagattctcagcaaagagcaatttctcaagcaaaaaTTTTGCTAgagctgtctgggagtggtctgagtggggagggggaaactgaaaacgagctgttattggcagagagatttggaactctttcttattggtcgaTCAACTCATTTAACGCacggtgatgtcaccaggcaggccaaaactccaccccaccaaaacaggctgattTTTCTTTTCACACAGCTCCTACACTTAAAGggtattatcatcattttcacaatttaacAGTATTATTCCAGCCTTATAGTGTGGAAATAGATAtataaacacaggaaaatcactcTTTTGACGGCACTGGCCTGTAACTACTGAACTTTGTTCTACTGTTCTGTAGCTACGTCCACCTGCTGCCACACTTCCTTTATTTTCTCCTTTGGCTTCTTACTCATTTTCTTTTTATATATTCATGTCcatctgttaatctctctctcctgtcatcatcatcatcatcttcctctACCATCCGTAGCATAGCTTTTATTTACTTCTTATTCCCTTCCTGTTTTTTGGTTACAATTTTTCTGCTATGTTTTTAGTTTCCGTGGTAACAGTCGGGGTTGTTGTCATGTGCCATAGCTCTAAGTGTTCTGGGTGTGCGCGGCCTGCGGTGTTGTCATGTCCAGATATACATCAAACCCCTGTATtctttttgggatgttttttttatttaatttagccTTTCTTTTCATATTTGacggttgtttgtttgtttttgttttgtttcttgtcattgtttttgttttgttttgaatcACCGGTTGGTTTGTTGATGAGTGAGGTGTTAAAGGTCGATGGATACGTTCTGATTATGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1622523 True 1793 lncRNA 0.41 1 9871082 9872874

Neighbor

gene id symbol gene type direction distance location
LOC110516202 LOC106593004 coding upstream 54 9809127 ~ 9871028 (+)
LOC110517298 LOC106564086 coding upstream 66299 9785793 ~ 9804783 (+)
LOC110518985 LOC106593960 coding upstream 90370 9775479 ~ 9780712 (+)
mvb12a LOC106564207 coding upstream 98969 9747308 ~ 9772113 (+)
LOC110510389 LOC106592846 coding upstream 185899 9600334 ~ 9685183 (+)
LOC110485424 LOC106592905 coding downstream 16627 9889501 ~ 9924663 (+)
LOC110487212 LOC106564193 coding downstream 88356 9961230 ~ 10002435 (+)
LOC118940260 LOC106594684 coding downstream 139621 10012495 ~ 10031963 (+)
LOC110518417 LOC106592827 coding downstream 440500 10313374 ~ 10350237 (+)
LOC110519905 LOC106593320 coding downstream 481779 10354653 ~ 10377753 (+)
G1418455 NA non-coding upstream 33483 9836583 ~ 9837599 (+)
G1418451 NA non-coding upstream 37937 9832583 ~ 9833145 (+)
G1418450 NA non-coding upstream 47314 9823475 ~ 9823768 (+)
G1418449 NA non-coding upstream 62789 9808031 ~ 9808293 (+)
G1418481 NA non-coding downstream 40301 9913175 ~ 9914142 (+)
G1418483 NA non-coding downstream 53982 9926856 ~ 9927070 (+)
G1418486 NA non-coding downstream 56465 9929339 ~ 9930269 (+)
G1418487 NA non-coding downstream 57423 9930297 ~ 9930507 (+)
LOC110493376 LOC106564189 other upstream 281128 9581609 ~ 9592897 (+)
LOC110510627 LOC106593081 other upstream 363270 9304567 ~ 9515031 (+)
LOC110487204 LOC106593073 other upstream 581985 9281428 ~ 9295974 (+)
LOC110485387 LOC106593109 other upstream 624391 9234394 ~ 9247725 (+)
G1418488 LOC106564225 other downstream 65599 9938473 ~ 9939331 (+)
G1418476 LOC106592804 other downstream 159973 10032847 ~ 10034985 (+)
G1418503 NA other downstream 164091 10036965 ~ 10057136 (+)
G1418740 NA other downstream 792140 10665014 ~ 10666546 (+)
G1418812 NA other downstream 1018165 10891039 ~ 10893394 (+)

Expression


Co-expression Network