XLOC_003355 (CU019562.3)


Basic Information

Item Value
gene id XLOC_003355
gene name CU019562.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 14862286 ~ 14863542 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006575
gtaaatataagtaaaatttgttaattttctttttttaagatcaAAGAAGAATTCAAAGGATTGACACCTACAGATGTGGAGTCTACCTTCATTGAACATTTGGACAATTACACAGAACAGCTCGtccatttatttcacaaaaaggGGGGAAGTGCAGGATGCAAAATCTGTGATGTGATGAAATTGCTGGAGCAGTGTGGACATTCTCTAGGAGGTGGTGATATGCTGTCTGACTGTGTACCTTTCTAAGAACCTTGAAAATCTGATTACACATTACCTGgacACCTGTGGGGAAACGGACCAGCTGGACATTGGAGAGCACATACCAAAAACTGTGACCATACGCACACATTCagtacattacggacaatttagcctacccaatttacctataccgcatgtctttggacttatgggggcaatcggagcacctggaagaaacccacatcaacacggggagaacatgaaaactctgcacagaaacaccaactgacccagccagggctcgaaccagcgtccttcttgctgtgaggtaattgtGCTGAGTGTTTGACAAGCACAGCTTTGAACGCTTTTTTTAAGAATACTCTTGAAACAGTTTTTGAAATATTGTTTCTATTAAAGcagtacatataaaaaaaa
>TCONS_00008577
tatttcacaaaaaggGGGGAAGTGCAGGATGCAAAATCTGTGATGTGATGAAATTGCTGGAGCAGGTATTGTTTACTGAAAATTCTGCTTGCCTGTTTTAGCATAGATGTTCATTGTCTCTACCatgtaatgcattttaaaatattacaatttatttatatatttttttctatttgcacTCACAGTGTGGACATTCTCTAGGAGGTGGTGATATGCTGTCTGACTGTGTACCTTTCTAAGAACCTTGAAAATCTGATTACACATTACCTGGTTAGTGAATGTAGTTAATTTAGTTCACTTTCAAATGACTTTTGTAGCAGGTTTTAATTGCAAACCTGAAAATACAATTAAGCATGTAAAATGTCAATTTAGAAAGATAAATTTTTTATATAGTTGAGTGATTTTAGTCATCTTAAATTGAgttcaacaaaaaatgaaaaattcctGTTTTTTAAATCACCCCAGCCAATCAAAGATGTGgttaactttttttcttctttagtaGAAGAGTAAAGAAAATTTGGAACTGAAGCACCTGTGGTCTTTGATAAAGATTTGCTAGTTAGCAGATGAAAGTTAGTCAACAAAGAccacagtttaagtttattttctttactgttctactgaagaaaagttCTGACTTTCAGGTTCTGATAGTCTTTTTCAGTTTCTtactttttccccatttttttacTTGGCTgtgcctttttttttattttatgaactgatgcataatatacattttgttttattgttttgtttcaggacACCTGTGGGGAAACGGACCAGCTGGACATTGGAGAGCACATACCAAAAACTGTGACCATACGCACACATTCagtacattacggacaatttag

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104286

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006575 False 642 lncRNA 0.41 3 14862286 14863542
TCONS_00008577 True 860 lncRNA 0.33 1 14862416 14863275

Neighbor

gene id symbol gene type direction distance location
XLOC_003354 si:ch73-60h1.1 coding upstream 110906 14676236 ~ 14751380 (+)
XLOC_003353 BX571942.1 coding upstream 221969 14431273 ~ 14640317 (+)
XLOC_003352 si:ch211-262i1.6 coding upstream 516174 14343445 ~ 14346112 (+)
XLOC_003351 ptbp1b coding upstream 519779 14321113 ~ 14342507 (+)
XLOC_003350 si:ch211-262i1.5 coding upstream 543199 14312260 ~ 14319087 (+)
XLOC_003356 CU019562.2 coding downstream 39167 14902709 ~ 14904977 (+)
XLOC_003357 CR550302.3 coding downstream 74362 14937904 ~ 14970911 (+)
XLOC_003358 CR550302.2 coding downstream 153643 15017185 ~ 15018524 (+)
XLOC_003359 NA coding downstream 475802 15339344 ~ 15341413 (+)
XLOC_003360 cdk5rap1 coding downstream 617153 15480695 ~ 15587134 (+)
XLOC_003318 CR450764.6 misc upstream 2150290 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 2168023 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 2176687 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 2182258 12679732 ~ 12680028 (+)
XLOC_003314 CR450764.9 misc upstream 2238435 12623555 ~ 12623851 (+)
XLOC_003369 CR854846.2 misc downstream 1259244 16122786 ~ 16123082 (+)
XLOC_003344 CT956066.1 non-coding upstream 780109 14081540 ~ 14082177 (+)
XLOC_003342 AL928649.1 non-coding upstream 997322 13864846 ~ 13864964 (+)
XLOC_003341 CR555295.2 non-coding upstream 1044602 13817569 ~ 13817684 (+)
XLOC_003332 NA non-coding upstream 1667689 13193723 ~ 13194597 (+)
XLOC_003362 FP016142.6 non-coding downstream 912530 15776072 ~ 15779251 (+)
XLOC_003363 FP016142.2 non-coding downstream 935841 15799383 ~ 15801396 (+)

Expression


Co-expression Network