XLOC_000336 (CU469541.1)


Basic Information

Item Value
gene id XLOC_000336
gene name CU469541.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 28903770 ~ 28904635 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000576
aataagaacCTCTGATGGCTCTAACACCATTTGTTCTGTTTTCACACCTCTGAGGGCACTGTCCTGTACTTCCCATGGTTGAGTCCGCAAAAAACTATGCTAATGAAGCTGCACTGAGACAAACATCAGAAAAGCATGGAAAAGAACCTCTATccattACCATTAATTAGATGTTGAAAATCTGAATGCATATTTAGACAAATGGCTGCATCTGAGCAAGTGTCGTGATGACGTGTGCAAGAAGTACAGCATCAAGCACTCAAACAGTTGATTTTGGGCATTGCTGGACATTAAAAGAGctccccattcacacggggcttcagcatcaac

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096538

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000576 True 330 lncRNA 0.42 2 28903770 28904635

Neighbor

gene id symbol gene type direction distance location
XLOC_000335 NA coding upstream 430357 28472199 ~ 28473413 (+)
XLOC_000334 psip1a coding upstream 708503 28089703 ~ 28195267 (+)
XLOC_000333 chst10 coding upstream 856528 28031697 ~ 28047242 (+)
XLOC_000332 sugt1 coding upstream 883728 27977297 ~ 28020042 (+)
XLOC_000331 dnajb14 coding upstream 1008953 27867706 ~ 27894817 (+)
XLOC_000337 cbsa coding downstream 164014 29068649 ~ 29093562 (+)
XLOC_000338 cryaa coding downstream 192246 29096881 ~ 29100923 (+)
XLOC_000339 ankrd10a coding downstream 236249 29140884 ~ 29164911 (+)
XLOC_000340 BX908780.5 coding downstream 269560 29174195 ~ 29180648 (+)
XLOC_000341 si:ch211-198k9.6 coding downstream 273482 29178117 ~ 29179934 (+)
XLOC_000327 NA non-coding upstream 2162621 26740115 ~ 26741149 (+)
XLOC_000325 NA non-coding upstream 2232560 26664689 ~ 26671210 (+)
XLOC_000323 AL954695.3 non-coding upstream 2319177 26577288 ~ 26584593 (+)
XLOC_000322 AL954695.2 non-coding upstream 2348931 26551034 ~ 26554839 (+)
XLOC_000346 BX908780.2 non-coding downstream 406892 29311527 ~ 29312559 (+)
XLOC_000347 CT573186.1 non-coding downstream 539817 29444452 ~ 29445719 (+)
XLOC_000348 CT573186.2 non-coding downstream 546830 29451465 ~ 29452733 (+)
XLOC_000349 NA non-coding downstream 595673 29500308 ~ 29501034 (+)

Expression


Co-expression Network