XLOC_003360 (cdk5rap1)


Basic Information

Item Value
gene id XLOC_003360
gene name cdk5rap1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 15480695 ~ 15587134 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006580
aaaagaaagaggaAAGCAACCTGGCTGTGAGACATGAACAGAATTAGTACTTTCAAACTCATTAGATGCATCTTTAGAAAATGTTTGTCTCCACGAATTTGTAGAGATATATATCACCGATATTACTGCACAGAGTCCAGTTCTCACGGTACTGGTCTCAGCAGAATCATGCAGCTAAAAAGTAAACTAACAAATGGTCCCAGTTTTCAGGATTTCATCATGAGTTCTGATAAAAGCGATTTTGACGGCAGTGAGGAATATGAGGAGCACTATATTCCTAAATACATGTCAGACCATTCACGGAaagTATATTTTGAAACATATGGCTGTCAGATGAATACCAATGACACTGAAATTGCTTGGTCCATTCTACAAAAAGCAGGATACTCAAGGACGCTTGAGCTTCAAAAGgcaGATGTGGTATTGCTTGTCACTTGCTCCATAAGAGAAAAGGCAGAGCAAACGATTTGGAACAGGCTCAAACATCTCACTGCCTCCAAGAAAAGGATTCAAAAACACAAGCGTTCATTAACAATAGGTGTCCTAGGATGCATGGCGGAAAGACTGAAATCAGAGTTACTTGACCAGGAGAAACTGGTGGATGTACTAGCTGGGCCAGATGCATACAGAGATCTTCCTCGGTTATTGTCTCTTGCTCATGGAGGCCAGCGGGCTAGCAATGTCTTATTATCATTAGAGGAGACATATGCTGATGTCATTCCTGTCCATCAGACTCTGGAGGGGCACAGTGCCTTTGTGTCCATCATGCGTGGCTGTGATAACATGTGTAGTTACTGTATAGTGCCTTTCACTCGTGGCAGAGAGAGGAGCAGACCCATGTCTTCCATTGTGGAGGAGGTTCGCATGCTTTCGGATCAGGGAGTAAAGGAGATCACCCTTCTTGGGCAGAATGTGAACAGCTATAGAGACCTGTCTAAATTGCAGTTCTCCTGTTCTGAGAGAAACACTCAACTCAGCAGAGGCTTTCAGAGTGTATATCGCACAAAACAGGGAGGTCTTCGCTTTGCAGACCTTCTGGACAGAGTGTCCCTTATCAATCCAAATATGAGGATACGCTTCACCTCACCACACCCTAAAGACTTCCCTGATGAGgTGTTACAGTTGATTCAGGAGAGAAGTAATATATGCAAGCACCTCCATTTGCCAGCGCAGAGTGGCAGCAGTCGGATTCTTCATGCTATGAGACGTGGTTACACTCGAGAGGCATATCTTGAGCTTGTGGAAAATATTCGGAAAATAATACCAgGAGTCAGTTTGAGCAGTGATTTCATAGCAGGATTCTGTAGTGAGACTGAAGAAGACCATCAGCAGACCATCTCCCTCCTCAAGGAAGTGGGCTACAATATTGGCTTTTTCTTCACCTACAGCATGAGAAAGAAAACCCATGCATATCATCGGTTGGAAGATAATGTTCCTGCACCAGTGAAAAAGCGCCGTCTGGAAGAACTTATCTCTGTTTTTAGAGAAAAGGCAACTAAAGTCAACATGACTCTTATCGGCAACACACAGCTTGTATTGGTAGAGGGAAAAAGCAAAAGATCATCTGAGGAGCTTTGTGGACGAAATGATGGAAATGTGAAAGTGATCTTTCCTAAAACAAATTTGCCTGTTCAACCAGAGAAAACTCAGATGGCCTGCATTACACCTGGTGATTATGTGTTAGTCAAGaTCACATCAGCTAATTCGCAGAGTTTGAGAGGACATGCCTTAAACCACTCCTCactgaatgacagaaaaacagCCTGACAATCTTCTGTGTGAATCCCTGCTGACCTAAAGATATCCAAAATGACTTGCTTTTTTCATTTGACTATGTGCActcattaatgtattattatgttttgtgtgttaaaacaaaatgttaataaatgctaaacaaataaaaaagaaatgttaaaGATGTAATGTGCAGAAAAATAAATGGACAGTTTCTCTAAATTATTTTGATGTACATGAAATTGCAAATGGAATTTCTCTAATTGCAAAGTGTTCAGCTTGTACTGGGCAGTTTgtgacactgaaaaaaataaacgtgTAAGATTTACTTGTAACTGTTTTCATGAGTGGATGGAAAttgtaacttaaataaaaaataattgta
>TCONS_00006581
AGAATTAGTACTTTCAAACTCATTAGATGCATCTTTAGAAAATGTTTGTCTCCACGAATTTGTAGAGATATATATCACCGATATTACTGCACAGAGTCCAGTTCTCACGGTACTGGTCTCAGCAGAATCATGCAGCTAAAAAGTAAACTAACAAATGGTCCCAGTTTTCAGGATTTCATCATGAGTTCTGATAAAAGCGATTTTGACGGCAGTGAGGAATATGAGGAGCACTATATTCCTAAATACATGTCAGACCATTCACGGAaagTATATTTTGAAACATATGGCTGTCAGATGAATACCAATGACACTGAAATTGCTTGGTCCATTCTACAAAAAGCAGGATACTCAAGGACGCTTGAGCTTCAAAAGGTACTTTTTTCAGCAAAAGTTATAAATGTTTCTATATATACCCATGGTGCTATTATTTAACCTGTTTTGCAAGATGAAAAGATAGatgtttttcaaacaaaaatcaTGACTCATCAACTTTCATGCTAAAATTTATTCTAAACGTATTAAATAATTCAAGAACAACTAATTACATGCGTTGGCAATAATCAGGGACTTTTGACCATGCATAAAGAACCCTACATATAATTAGATACCATTTACAGGTTGAATGTAAAGTAACCTTTTAAGTATTActttttatgttattaaaaatctatattacagtgcatgtatgtatgtttctatgtaagtgtgtgtatatataggggttggacaataaaactgaaacagtagccaatttagtgttggaggaTTCATagctaaatttgaccagcctggtggccagtcttcattgattgcacattcTACCTGTAAGAACAGTGTTtgaaggtttaattagcagagtaataACAAAGTTTTGCTTAAACTATTGCAGTGCACACAATATTATGGGTGACATTAGTtaaaagaggacaaattgttgGTACGAATCTTGCTGGTGCATGTGTCCAAGAGAGCATgtctttgtgatgtatcaagagTAGTGTTGTCATAATACTGGAACTAAACAGCACTCATTTGTTTGCAAGAAATTgaggtttttaaaatttcagtaccgatcgGTATGGAAATTCAGTATCAAGACAACACTAATCAAGAGCCATGGTATCCAGATTAATGTCAGCATACCACTAAGTAGGACGAACCACATCCAAAAGAAAAGTAATTGTGGGCAAAAGAGGAAGCGGTCTAAAAGTGATGTCTAGGTTCTAGGAGTTTAACGGATCATGATcttgatgctcaaaaatgaaagttttttctTTAACATTATTTTGTCAATaagtggcgacaaccagccatcaaaaatatgccactgtaTAGTTATTCAAAAATGATCCATCTAGTACTGATACTTctagtactgtttttgtaataaatagaaGGCAAATTatatttgtctcctcccctttttaactGATCCGAAAAATGCTCCAATCCGTGACTtaaaaaaccataatgtgattCACACAATTACTAGGTGCTAGCACGTATtgtatgcaaaaaaacaaaaaaaaaaaaaaaaaaaa

Function

symbol description
cdk5rap1 Predicted to enable N6-isopentenyladenosine methylthiotransferase activity. Predicted to be involved in negative regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within tRNA modification. Predicted to be active in cytosol and mitochondrion. Orthologous to human CDK5RAP1 (CDK5 regulatory subunit associated protein 1).

GO:

id name namespace
GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0006400 tRNA modification biological_process
GO:0005829 cytosol cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016740 transferase activity molecular_function
GO:0035596 methylthiotransferase activity molecular_function
GO:0035597 N6-isopentenyladenosine methylthiotransferase activity molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-90 Predicted to enable N6-isopentenyladenosine methylthiotransferase activity. Predicted to be involved in negative regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within tRNA modification. Predicted to be active in cytosol and mitochondrion. Orthologous to human CDK5RAP1 (CDK5 regulatory subunit associated protein 1).

Ensembl:

ensembl_id ENSDARG00000044925

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006580 False 2122 mRNA 0.41 13 15480695 15587134
TCONS_00006581 True 1541 lncRNA 0.34 2 15480734 15483023

Neighbor

gene id symbol gene type direction distance location
XLOC_003359 NA coding upstream 139282 15339344 ~ 15341413 (+)
XLOC_003358 CR550302.2 coding upstream 462171 15017185 ~ 15018524 (+)
XLOC_003357 CR550302.3 coding upstream 509784 14937904 ~ 14970911 (+)
XLOC_003356 CU019562.2 coding upstream 575718 14902709 ~ 14904977 (+)
XLOC_003355 CU019562.3 coding upstream 617153 14862286 ~ 14863542 (+)
XLOC_003361 gdf11 coding downstream 26084 15613218 ~ 15756385 (+)
XLOC_003362 FP016142.6 coding downstream 188938 15776072 ~ 15779251 (+)
XLOC_003363 FP016142.2 coding downstream 212249 15799383 ~ 15801396 (+)
XLOC_003364 FP003590.2 coding downstream 234299 15821433 ~ 15868456 (+)
XLOC_003365 pank4 coding downstream 291209 15878343 ~ 15915788 (+)
XLOC_003318 CR450764.6 misc upstream 2768699 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 2786432 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 2795096 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 2800667 12679732 ~ 12680028 (+)
XLOC_003314 CR450764.9 misc upstream 2856844 12623555 ~ 12623851 (+)
XLOC_003369 CR854846.2 misc downstream 535652 16122786 ~ 16123082 (+)
XLOC_003353 BX571942.1 non-coding upstream 840378 14431273 ~ 14640317 (+)
XLOC_003368 ctbs non-coding downstream 483304 16070438 ~ 16083608 (+)
XLOC_003374 NA non-coding downstream 1505944 17093078 ~ 17170177 (+)
XLOC_003375 CR769769.1 non-coding downstream 1550714 17137848 ~ 17141887 (+)

Expression


Co-expression Network