G1423888


Basic Information

Item Value
gene id G1423888
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 16036278 ~ 16103168 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1630053
TGCCAGGGTGTCATACTCTGGTGACCTGGTCTTCATGTTCAGAGATGTGTTCGTATCACTGTTAGGATTAGGATGGACACTctgtggagagagacacagaaacacaaataCGCAATACTGCATAAAACACAAATACATTAATTAATTTGCTTCCTGTCTGTTTCTGCTGTATTGGTATTGAAATAACTTTGGTTTTTGACATTATCACCTGTGTCTGCTGTGGCATCACTTCCTCCTGTGGATCTCCTGTAATGAGGGACGGAGTGAGTTCTGCTCTCTACTGACCTTAGTGTAAGATAAGTACATGTAAATGTCAGACTCACCTCTTCAGAGTGCAGTAGATGTTGACTAGAAGAGCTCCAGCAGTCAGGAcagcccccacccccaccacaggAAACCAGAGAAACACTGCGGCAGGATCATGAGGTTATAAATGCATGGTGGAGATATGACATAGAAGAACCcagggaaacactgctgtagtaTCATGAGTTTATAAATGCATGATGGAGATATGACAGAGGAAACCAGGGAAGAAGAAAATGAAACAATATGTATTTAATTATATATCATATGGGATGATAAGTGTGTAACATTACTAATTCTATATCATATGGGATGATAAGTGTGTAACATTACTAATTCTATAACATATGGTATGATAAGTGTGTAATATTACTAATACTATGTCATATGGTATGATAAGTGTGTAACATTACTAActattatttattgttgttgacCTGTGTGATTGTCAATGAATAGATGAAGGTTAGGTGAACTTACACTGAACGTTCACAAACACAGAAGAAGAGTTGAGACGTCCATATTTATTCTCAGCCTCACAGTAatattctcctctgtcctcagagATGATGTTAGTGATGCTGTAACTCTGTCCTGATGCTTTTGGTGAGGTTACGTTCTTCTTGTACCAGGTGTATTTGTCCACAGGAgggttggcatcactgctgcaggtcagagtcactgaactgcTCTCCACTAGTTCACCGAAGGGACTGACACTGAGGTGGTCTTTGGTTTATATCTGACAGTGAGAGTCTTTTCAGCAGAGGCGAGATCCTCCTGGCCGTTTACAGCACAGGAGTATCTGCCTGCATCCTCACTGCTGACTGGGTCTAGGATCAGGTACTTGGTCTCGTGACTGAACAGACgttgtccgttcttgtaccagatgtaaGAAGGGTTGTCCTGCAGAAAGCATATGGACTCACAGAACAGACGAAGACACGTTCCCTCTATGATGTTGGTTGGATCCTTAATCCGCACCTGAAGACCTGTGACAGTCAGAGTTGTTCCAGGGAAGCTGTACCCCCATCCTGAGGTTTGTGTGTTGAATATGAACTTGTATTCAGCAGAGTCCTCCTCTCTCAGATCTGTGATTCTCAGGGTGGAACGaccgctctccttctctccaacATACTCCACACGACCTGCGTACCCTGGGTCTGTGGTTAGGTCCTCAGGGACCAACTCATCCTTCCAGCTGGAACTCTGTTTAGAACTAAACCAGTGTGATGATGTGATCGTAGCATCACCACTGTCATACGTGGAGGATATATCCAATGTTGA
>TU1630054
GCTGTAGAGATCTTAGATCCTATTGTATTCTGGGCCTCACAGTAatattctcctctgtcctcagagAGGATGTTAGTGATGCTGTAACTCTGTCCTGATGCTTTTGGTGAGGTTACGTTCTTCTTGTACCAGGTGTATTTGTCCAcaggtgggttggcatcactgctgcaggtcagagtcactgaactgcTCTCCACTAGTTCACCGAAGGGACTGACACTGAGGTGGTCTTTGGTTTATATCTGACAGTGAGAGTCTTTTCAGCAGAGGCGAGATCCTCCTGGCCGTTTACAGCACAGGAGTATCTGCCTGCATCCTCACTGCTGACTGGGTCTAGGATCAGGTACTTGGTCTCGTGACTGAACAGACgttgtccgttcttgtaccagatgtaaGAAGGGTTGTCCTGCAGAAAGCATATGGACTCACAGAACAGACGAAGACACGTTCCCTCTATGATGTTGGTTGGATCCTTAATCCGCACCTGAAGACCTGTGACAGTCAGAGTTGTTCCAGGGAAGCTGTACCCCCATCCTGAGGTTTGTGTGTTGAATATGAACTTGTATTCAGCAGAGTCCTCCTCTCTCAGATCTGTGATTCTCAGGGTGGAACGaccgctctccttctctccaacATACTCCACACGACCTGCGTACCCTGGGTCTGTGGTTAGGTCCTCAGGGACCAACTCATCCTTCCAGCTGGAACTCTGTTTAGAACTAAACCAGTGTGATGATGTGATCGTAGCATCACCACTGTCATACGTGGAGGATATATCCAATGTTGA
>TU1630055
GTGTTCTTTGGGCCATCTAGTAAAGAGGATGACAGAAAAGAGGCGAGATCCTCCTGGCCGTTTACAGCACAGGAGTATCTGCCTGCATCCTCACTGCTGACTGGGTCTAGGATCAGGTACTTGGTCTCGTGACTGAACAGACgttgtccgttcttgtaccagatgtaaGAAGGGTTGTCCTGCAGAAAGCATATGGACTCACAGAACAGACGAAGACACGTTCCCTCTATGATGTTGGTTGGATCCTTAATCCGCACCTGAAGACCTGGAGTAAAAACATCATTA
>TU1630056
GCTGTAGAGATCTTAGATCCTATTGTATTCTGGGCCTCACAGTAatattctcctctgtcctcagagAGGATGTTAGTGATGCTGTAACTCTGTCCTGATGCTTTTGGTGAGGTTACGTTCTTCTTGTACCAGGTGTATTTGTCCAcaggtgggttggcatcactgctgcaggtcagagtcactgaactgccctccactatttcaccagagggactgactgacactgagGTGGTCTTTGGTTTATCTGATAGAAAAATGTGTCACAATACTTTCGTTTTGAGTTCAGAATATATATCTGTAAAATCACAATTAAAGTAAAATAGAGTAGAAATTGGAGATGATATGCAAAACATTTACAGGAACAATATTTTAACTCCAACTTCATTCTCAGCCTCACAGTAatattctcctctgtcctcatagCTGATATTATGGATGGTGTATCTCTGTCCAGAATGTTTCATTGACATTTTCTTGTATGTTATCTTGTACCAggtgtgtttgttttattttacctttatttaac

Function

NR:

description
PREDICTED: B-cell receptor CD22-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1630053 False 1593 lncRNA 0.43 7 16036278 16040117
TU1630054 False 787 lncRNA 0.49 4 16036278 16103168
TU1630055 False 285 lncRNA 0.48 2 16037188 16037700
TU1630056 True 526 lncRNA 0.38 2 16037968 16103168

Neighbor

gene id symbol gene type direction distance location
LOC110485584 va0e2 coding downstream 97726 15936074 ~ 15938556 (-)
LOC110518551 LOC106591223 coding downstream 118755 15898886 ~ 15917523 (-)
LOC110487244 LOC105012087 coding downstream 164547 15850674 ~ 15871731 (-)
LOC110485609 LOC106591329 coding downstream 238399 15777687 ~ 15797879 (-)
LOC110487262 hoga1 coding downstream 276084 15744215 ~ 15760194 (-)
LOC118940334 p40phox coding upstream 178229 16281397 ~ 16330030 (-)
LOC110515368 LOC105012189 coding upstream 256178 16359346 ~ 16373440 (-)
LOC110512844 pla2g6 coding upstream 270557 16373725 ~ 16400027 (-)
LOC110512923 LOC106590932 coding upstream 368749 16471917 ~ 16544688 (-)
LOC118940336 LOC106590989 coding upstream 389621 16492789 ~ 16523216 (-)
G1423897 LOC106601625 non-coding downstream 27319 16008315 ~ 16008959 (-)
G1423819 NA non-coding downstream 61745 15974270 ~ 15974533 (-)
G1423881 NA non-coding downstream 72310 15963704 ~ 15963968 (-)
G1423880 NA non-coding downstream 78600 15957457 ~ 15957678 (-)
G1423879 NA non-coding downstream 79822 15955987 ~ 15956456 (-)
G1423889 NA non-coding upstream 1139 16104307 ~ 16117548 (-)
G1423958 NA non-coding upstream 52929 16156097 ~ 16156299 (-)
G1423962 NA non-coding upstream 59189 16162357 ~ 16162659 (-)
G1423964 NA non-coding upstream 62489 16165657 ~ 16166274 (-)
G1423967 NA non-coding upstream 68203 16171371 ~ 16224652 (-)
G1423891 NA other downstream 49436 15985273 ~ 15986842 (-)
G1423836 NA other downstream 205268 15808686 ~ 15831010 (-)
G1423112 NA other downstream 452185 15583695 ~ 15584093 (-)
G1422920 LOC106591235 other downstream 622681 15397290 ~ 15413597 (-)
G1422918 NA other downstream 631104 15383119 ~ 15405174 (-)
G1424040 NA other upstream 266589 16369757 ~ 16370443 (-)
G1424051 cbx6 other upstream 303563 16406731 ~ 16410128 (-)
G1424038 LOC106591467 other upstream 308890 16412058 ~ 16418005 (-)
LOC110508387 LOC106599573 other upstream 552100 16564951 ~ 16674565 (-)
G1424234 NA other upstream 667269 16770437 ~ 16772957 (-)

Expression


Co-expression Network