G1423933 (LOC106591407)


Basic Information

Item Value
gene id G1423933
gene name LOC106591407
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 16100337 ~ 16102815 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1630107
AACTTAGACAATAATGTAACAATACAGTGTTTATGAAGTACGTGTAGTTAGTGCAGTAATGAGATGAGTACAATCATGGAACTTGTTCTGTTCCACTGCAACACTATCTAATGATTGGATGATTTTGGCAGACTTTAAAAGTGTATtagtcacactcacacactgcaggagaATTGATGTCTTTTACAGCACAGTAGAAGCTGTCTTCAGTTTTCAAGTACAATGAGTATGAGGGGGAGGAGGCTCCTTGTACAATCGTACTGTTCctgtaccagatgtaggtggggttaccagtcagagtacaggtggtgctacaggtcagtgtcaTTAACCACCATGTAGTGGTCACCTTCACCTGCAGGTCTGGAGTAGATAACAACATTAAAACCATTAATGACCTGTTGTCTAGTTCAAATGAGGCAGGAGTGGACGTTCTCAAATCATCAATTCAGACATTCCTATTATACCATACATTCATATTAATTATATTATTTCTGTACAAATCAAGACAATTTTCCAGAACCACttaaacagatcaacaccatatataatatcactgtacctgtaacagacagtgattaaacagatcaacactatatataatatcactgtacctgtaacagacagagtgattaaacaggtcaacactatatataatatcactgtacctgtaacagagtgattaaacagatcaacactatatataatatcactgtacctgtaacagacagagtgattaaacaggtcaacactatatataatatcactgtacctgtaacagacagagtgattaaacaggtcaacactatatataatatcactgtacctgtaacagacagagtgattaaacaggtcaacactatatataatatcactgtacctgtaacagacagagtgattaaacaggtcaacactatatataatatcactg

Function

NR:

description
B-cell receptor CD22-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1630107 True 931 lncRNA 0.36 2 16100337 16102815

Neighbor

gene id symbol gene type direction distance location
LOC110485584 va0e2 coding downstream 161785 15936074 ~ 15938556 (-)
LOC110518551 LOC106591223 coding downstream 182814 15898886 ~ 15917523 (-)
LOC110487244 LOC105012087 coding downstream 228606 15850674 ~ 15871731 (-)
LOC110485609 LOC106591329 coding downstream 302458 15777687 ~ 15797879 (-)
LOC110487262 hoga1 coding downstream 340143 15744215 ~ 15760194 (-)
LOC118940334 p40phox coding upstream 178582 16281397 ~ 16330030 (-)
LOC110515368 LOC105012189 coding upstream 256531 16359346 ~ 16373440 (-)
LOC110512844 pla2g6 coding upstream 270910 16373725 ~ 16400027 (-)
LOC110512923 LOC106590932 coding upstream 369102 16471917 ~ 16544688 (-)
LOC118940336 LOC106590989 coding upstream 389974 16492789 ~ 16523216 (-)
G1423898 LOC106605911 non-coding downstream 11266 16009914 ~ 16089071 (-)
G1423886 LOC106598988 non-coding downstream 14402 16007948 ~ 16085935 (-)
G1423928 NA non-coding downstream 21470 16078329 ~ 16078867 (-)
G1423897 LOC106601625 non-coding downstream 91378 16008315 ~ 16008959 (-)
G1423819 NA non-coding downstream 125804 15974270 ~ 15974533 (-)
G1423889 NA non-coding upstream 1492 16104307 ~ 16117548 (-)
G1423958 NA non-coding upstream 53282 16156097 ~ 16156299 (-)
G1423962 NA non-coding upstream 59542 16162357 ~ 16162659 (-)
G1423964 NA non-coding upstream 62842 16165657 ~ 16166274 (-)
G1423967 NA non-coding upstream 68556 16171371 ~ 16224652 (-)
G1423891 NA other downstream 113495 15985273 ~ 15986842 (-)
G1423836 NA other downstream 269327 15808686 ~ 15831010 (-)
G1423112 NA other downstream 516244 15583695 ~ 15584093 (-)
G1422920 LOC106591235 other downstream 686740 15397290 ~ 15413597 (-)
G1422918 NA other downstream 695163 15383119 ~ 15405174 (-)
G1424040 NA other upstream 266942 16369757 ~ 16370443 (-)
G1424051 cbx6 other upstream 303916 16406731 ~ 16410128 (-)
G1424038 LOC106591467 other upstream 309243 16412058 ~ 16418005 (-)
LOC110508387 LOC106599573 other upstream 552453 16564951 ~ 16674565 (-)
G1424234 NA other upstream 667622 16770437 ~ 16772957 (-)

Expression


Co-expression Network