G1424223


Basic Information

Item Value
gene id G1424223
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 16845932 ~ 16850533 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1630496
gagtCTCCAggcagttttttatttatttttatttcacctttatttaaccagttaggcaagttgagaacaagttctaatttacaactgcgacctggccaagataaagcaaagcagttcgacacatataacaacacagagttacacatggagtaaaacaaacatacagtcaataatacagtataaacaagtctatatacaatgtgagcaagtgaggtgagataagggaggtaaaggcaaaaaaaggccatggtggcaaagtaaatacaatatagcaagtaaaacactggaatggttgatttgcagtggaagaatgtgcaaagtagagatagaaataatggggtgcaaaggagcaaaataaataaatacagtagggaaagaggtagttgtttgggctaaattataggtgggctatgtacaggtgcagtaatctgtgagctgctctgacagctggtacttaaagctactgagggagataagtgtttccagtttcagagatttttgtagttcgttccagtcattggcagcagagaactggaaggagaggcggccaaagaaataattggttttgggggtgactagagagatatacctgctggagcgcgtgctacaggtgggtgctgctttggtgaccagcgagctgagataagggaggactttacctagcagggtcttgtagatgacctggagccagtgggtttggcgacgagtatgaagcgagggccagccaacgagagcgtacaggtcgcagtggtgggtagtatatggggctttggtgacaaaacggatggcactgtgatagactgcatccaatttgctgagtagagtgttggaggctattttgtaaatgacttgATTTAAGAGAAACAGGGataaaagtgagagagagaaacagggatataagagagaaacagggatataagagagagagaaacagggatttaagtgagagagaaaacagagtttaagtgagagagaaacagggatttAAGTGAGTGAAAAACAGGGATttaagtgagagagaaacaggcatataagtgagagagagaaacagggatataagtgagagagaaacagggatttaagtgagagggaaacagggatttaagtgagagagaaacagggatttaagtgagaaagaaacagggatataagtgagagagagaaacagggatttAAGTGAGCGAGAAACAGGGATttaagtgagagagaaacaggggtttaagtgagagagagaaacagggatttaagtgagaaagaaacagggatataagtgagagagagaaacagggatttaagtgagagagaaacagagatttaagtgagagagaaacaggggtttaagtgagagagagaaacagggatataagtgagagagagaaacagggatataagtgagagagagaaacagggatttaagtgagagagaaacagggatttaagtgagagagaaacaggggtttaagtgagagagagaaacagggatttaagtgagaaagaaacagggatataagtgagagagagaaacagggatttaagtgagagagaaacagggatttaagtgagagagaaacaggggtttaagtgagagagagaaacagggatataagtgagagagagaaacagggatataagtgagagagagaaacagggatttaagtgagagagagagaaacatggatataagtgagagagagaaacagggatataagtgagagagaaacagggatatatgtgagagagagaaacagggatttaagtgagagagagaaacagggatataagtgagagagagaaacagggatataagtgagagagaaacagggatataagtgagtgagagaaacagggatttaagtgagagagaaacagtgatataagtgagagagaaacagggatataAGTGAATGAGAAACAGGGATATaagtgagtgagagaaacagggagaaagaaaAGGAAGAAACTTGGTCATAACAAACATGGACATTGTTCTATTGACACACTGGGTGCAACTCAAGACGTGATTTTTGTATTCTATTTTGTTATGCACTTACTTTCAAGTGAAACTCAGTCATCTTGTTGTTCATTGAGCTGAGAGAAGGCTGAGAGGGCGGTGCTGTGTTCCTTTGTCTCTGCTCTGCTATTCTACTTCCTTTCTTTTGATCCTTTTTTTAGTGTGTTTTTCTTCTTTTACCTCACACTTGGCAGCTTGTGGTTTAATGCTTTTTAAAGGTGTCCTTCCACTTACAGTTTCCTACCTACACCTTCAAAATGGACAGTTCATTCCCGCCATTTTGGGTCCAAACAACTCAGTTGGCAATTGTTTGAATGCTGTTTGTCTTTACTCTCAGTAACCTTAACAACAGATGCCCTGTTGTGCTATTCTGACTGACAGGTCAGCTTTTTATGACGTTGGTCTGTTGGTAGTCAAGTTTGACGTGCTTTCTGGTTTGgaccacatccacacacacaggctcgcgcatggacacacacacacacacacacacacaggctcgcgcatggacacacacacacacacgcagacatacacacacacgcacacacacacaggctcgcgcatggacacacacacacacgcagacatacacacacacacgcagacatacACACTGTGGCCTCTGTTTTGGGCTGTGGACTGGACTGGGGACGATTATGGTGGCTGTGTCTTTGTCAGTTAAACTGCCTGTCTGACTAGCTACTTTGTCTAgtgtactctctatcctctctatacacacacacacacacacacacacacacacacacacacacacacacacactgactgtccTCTCTATCCTCTGTTAGGCCTTGAAGGCTCTCCATTGTACACAGAAGCcatttctctgtcactctctgccTGAGTCTCAACCACTCTGAACCAGTTTGGGTCTTTCTGGGCCCAGAACCAAGGAGATGGATCTATATAGACATACTGTACACCACACATGCCCACGAacccatacacacccacacacagaaatacacacacacaaacacaaatacacacgctcacacaccaACCCAACCCCACTCTCTTGTCTCTGGTACCAAAGCCGTACTGGCATCAACACATTTCCTTTCTTTGTTTTTTCCCTCTCTTCTATTTATATTATGtcctttctttccttccttccttccttccttcc
>TU1630497
gagtCTCCAggcagttttttatttatttttatttcacctttatttaaccagttaggcaagttgagaacaagttctaatttacaactgcgacctggccaagataaagcaaagcagttcgacacatataacaacacagagttacacatggagtaaaacaaacatacagtcaataatacagtataaacaagtctatatacaatgtgagcaagtgaggtgagataagggaggtaaaggcaaaaaaaggccatggtggcaaagtaaatacaatatagcaagtaaaacactggaatggttgatttgcagtggaagaatgtgcaaagtagagatagaaataatggggtgcaaaggagcaaaataaataaatacagtagggaaagaggtagttgtttgggctaaattataggtgggctatgtacaggtgcagtaatctgtgagctgctctgacagctggtacttaaagctactgagggagataagtgtttccagtttcagagatttttgtagttcgttccagtcattggcagcagagaactggaaggagaggcggccaaagaaataattggttttgggggtgactagagagatatacctgctggagcgcgtgctacaggtgggtgctgctttggtgaccagcgagctgagataagggaggactttacctagcagggtcttgtagatgacctggagccagtgggtttggcgacgagtatgaagcgagggccagccaacgagagcgtacaggtcgcagtggtgggtagtatatggggctttggtgacaaaacggatggcactgtgatagactgcatccaatttgctgagtagagtgttggaggctattttgtaaatgacttgATTTAAGAGAAACAGGGataaaagtgagagagagaaacagggatataagagagaaacagggatataagagagagagaaacagggatttaagtgagagagaaaacagagtttaagtgagagagaaacagggatttAAGTGAGTGAAAAACAGGGATttaagtgagagagaaacaggcatataagtgagagagagaaacagggatataagtgagagagaaacagggatttaagtgagagggaaacagggatttaagtgagagagaaacagggatttaagtgagaaagaaacagggatataagtgagagagagaaacagggatttAAGTGAGCGAGAAACAGGGATttaagtgagagagaaacaggggtttaagtgagagagagaaacagggatttaagtgagaaagaaacagggatataagtgagagagagaaacagggatttaagtgagagagaaacagagatttaagtgagagagaaacaggggtttaagtgagagagagaaacagggatataagtgagagagagaaacagggatataagtgagagagagaaacagggatttaagtgagagagaaacagggatttaagtgagagagaaacaggggtttaagtgagagagagaaacagggatttaagtgagaaagaaacagggatataagtgagagagagaaacagggatttaagtgagagagaaacagggatttaagtgagagagaaacaggggtttaagtgagagagagaaacagggatataagtgagagagagaaacagggatataagtgagagagagaaacagggatttaagtgagagagagagaaacatggatataagtgagagagagaaacagggatataagtgagagagaaacagggatatatgtgagagagagaaacagggatttaagtgagagagagaaacagggatataagtgagagagagaaacagggatataagtgagagagaaacagggatataagtgagtgagagaaacagggatttaagtgagagagaaacagtgatataagtgagagagaaacagggatataAGTGAATGAGAAACAGGGATATaagtgagtgagagaaacagggagaaagaaaAGGAAGAAACTTGGTCATAACAAACATGGACATTGTTCTATTGACACACTGGGTGCAACTCAAGACGTGATTTTTGTATTCTATTTTGTTATGCACTTACTTTCAAGTGAAACTCAGTCATCTTGTTGTTCATTGAGCTGAGAGAAGGCTGAGAGGGCGGTGCTGTGTTCCTTTGTCTCTGCTCTGCTATTCTACTTCCTTTCTTTTGATCCTTTTTTTAGTGTGTTTTTCTTCTTTTACCTCACACTTGGCAGCTTGTGGTTTAATGTTTTTTAAAGGTGTCCTTCCACTTACAGTTTCCTACCTACACCTTCAAAATGGACAGTTCATTCCCGCCATTTTGGGTCCAAACAACTCAGTTGGCAATTGTTTGAATGCTGTTTGTCTTTACTCTCAGTAACCTTAACAACAGATGCCCTGTTGTGCTATTCTGACTGACAGGTCAGCTTTTTATGACGTTGGTCTGTTGGTAGTCAAGTTTGACGTGCTTTCTGGTTTGgaccacatccacacacacaggctcgcgcatggacacacacacacacacacacacacaggctcgcgcatggacacacacacacacacgcagacatacacacacacgcacacacacacaggctcgcgcatggacacacacacacacgcagacatacacacacacacgcagacatacACACTGTGGCCTCTGTTTTGGGCTGTGGACTGGACTGGGGACGATTATGGTGGCTGTGTCTTTGTCAGTTAAACTGCCTGTCTGACTAGCTACTTTGTCTAgtgtactctctatcctctctatacacacacacacacacacacacacacacacacacacacacacacacacactgactgtccTCTCTATCCTCTGTTAGGCCTTGAAGGCTCTCCATTGTACACAGAAGCcatttctctgtcactctctgccTGAGTCTCAACCACTCTGAACCAGTTTGGGTCTTTCTGGGCCCAGAACCAAGGAGATGGATCTATATAGACATACTGTACACCACACATGCCCACGAacccatacacacccacacacagaaatacacacacacaaacacaaatacacacgctcacacaccaACCCAACCCCACTCTCTTGTCTCTGGTACCAAAGCCGTACTGGCATCAACACATTTCCTTTCTTTGTTTTTTCCCTCTCTTCTATTTATATTATGtcctttctttccttccttccttccttccttcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1630496 False 3164 lncRNA 0.43 2 16845932 16850533
TU1630497 True 3164 lncRNA 0.43 2 16845932 16850533

Neighbor

gene id symbol gene type direction distance location
LOC110494924 LOC106592628 coding downstream 9217 16819145 ~ 16836715 (-)
LOC110494933 LOC106591120 coding downstream 104400 16736497 ~ 16741532 (-)
LOC110494948 LOC106564393 coding downstream 114543 16717096 ~ 16731389 (-)
LOC110494903 LOC106564394 coding downstream 134038 16706615 ~ 16711894 (-)
LOC110495074 LOC106564395 coding downstream 144104 16697311 ~ 16701828 (-)
LOC110495067 LOC106590617 coding upstream 9857 16860390 ~ 16933566 (-)
LOC110494935 LOC106590780 coding upstream 88770 16939303 ~ 16968595 (-)
LOC110493425 LOC106594459 coding upstream 130200 16980733 ~ 16987774 (-)
LOC110495066 rayl coding upstream 238491 17089024 ~ 17108667 (-)
LOC110495065 LOC106564434 coding upstream 291530 17142063 ~ 17146929 (-)
G1424226 NA non-coding downstream 416 16844061 ~ 16845516 (-)
G1424224 NA non-coding downstream 2167 16843226 ~ 16843765 (-)
G1424249 NA non-coding downstream 39390 16806172 ~ 16806542 (-)
G1424234 NA non-coding downstream 74924 16770437 ~ 16772957 (-)
G1424225 NA non-coding upstream 1988 16852521 ~ 16854548 (-)
G1424274 NA non-coding upstream 50438 16900971 ~ 16901204 (-)
G1424306 NA non-coding upstream 145542 16996075 ~ 16996275 (-)
G1424309 NA non-coding upstream 147971 16998504 ~ 17063510 (-)
LOC110508387 LOC106599573 other downstream 187402 16564951 ~ 16674565 (-)
G1424038 LOC106591467 other downstream 431073 16412058 ~ 16418005 (-)
G1424051 cbx6 other downstream 435804 16406731 ~ 16410128 (-)
G1424040 NA other downstream 475489 16369757 ~ 16370443 (-)
G1424227 NA other upstream 218 16850751 ~ 16851486 (-)
G1424218 NA other upstream 4944 16855477 ~ 16938699 (-)
G1424547 NA other upstream 606396 17456929 ~ 17457504 (-)
G1425321 NA other upstream 1058532 17909065 ~ 17911376 (-)

Expression


Co-expression Network