G1425224 (LOC106564420)


Basic Information

Item Value
gene id G1425224
gene name LOC106564420
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 17620347 ~ 17622476 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1631705
CCCTCTTGCCTATCGCCTACCTATACCTGTGTCATATATATCTGTATGCTTCAAATATTGCATATCTCATAATAATATGTTAAATAAACTGGCTTTTCCAACTGGGTATTTTAAAGTGGCACTTCGCTACTTATTTAACCTGATATTCCTACTGTCCTTCCTGCAACATGCCGGTGTCCACATGGAGATATTGAATATGAGCTTAGAAAATAGTGGAGTGCCCCTTTAATTCTAACGGATAATGAGAAAGAATGAAAGGAGGATAAGCTGGACGACGAGCGATCGAGTGAGAGATTTGTTCCTCTCTGATCTCTTCCTGTCTTCAAGAAAAACCAAAACATACTGCAGGTAAGCGGACATCTTTGACATCTTTGTGGTTGTGGTGTGGGTGCGCTTGTGTATTTATGTGACCATCTGAGTGTGAGcgttgaaaaaaatattttatagatCCACTTCAGTGTTTTCTGTAATCCACCTGAGGTATACAATTTTCCTTCAAAACGTCGATACACAACGCTGCACAAATGTCAACAAGGGGGGGACAAGAGACAAGAACTCCATTTTGTGAAACTGACCGGGACTTTGTTTTACTTTGTGTTTCACCAACCAAGATGGCGTCCGATCTCGATCTCTCATTGGATATGGTGCATCTATCCAGTAGGGACAGGAGAGCATCTTCTCTGAAGCCCTTGGTTCATGGGTGATTCATGAGAACATTGTCTATTCCTCTATGGTACGGCATATGTTCTCATTCACTCCCCACGTCTCTTCACTATAGCTCTCACATATTGATTTATTTTCCATTCAAAAGGTGCCCTTTTGCTAATTCTAGTATTTCTAGATTAGCCTTTATATCTCATCctaacacacacagagggacacatcTGCATTCATACAGATCCAATATGTTTTATAACTAGAAAACCCATCAAATATGCAACCTTGATTTTTTTTCACCTATCAAATGTTAAGCTAAAAGAAAAAGTTGGTAATCAATGCTACCTTATAGATGtgaataaaaaacaacaactttgtACAAAGTCTCATCGAAAGGACTCTACAATCTGCTTATCTTAATAATGAGCATTGTCTTTTTTCAAGAGGACAAAACCATTAGACTACCATTAGCCACTGGGCTATGCTAGCCCTGTTGTCAATCACAGGAGCATTAGCATTAGCCGCTAAGCTAAGCTAGCCCTGTTAGTCAATCGTTTTCTTTTCGAGTTTCATCAATGTTCCGACAATGCTCACACGAaattcacattttgttactttttttgcttttctttggGTGTATGGATGAGGGCGACTATACTCCATGCAAGCCCAGAATTAGCATGTTTTTCAAGGGTCCTGTCATTGCTGTAGTCCTCTCAAAGAATATCCACATGTCTCAGAAAATGAGATGCCTTAATTAAACTCCATTACCCAGAAGTCATTGTAATCCTCCACAAAATGTATACCAATCACTCAGCTTCAATTTTCACCCAATCGTCATGGAAAGAAGAGAACATGGACATCTCactgatgaaagagagagagcgaaagaaggaGGAGACGAGTTCATTGAACAGATATCAATCAAACACCTCTGGAGGAGAAAAAAAAGTTCCGACCGATAGATAAAGTTTCATCTGTTTTTCCTCGAGCCGGAATCCATCATCTGGCTTGTACCTTTAACTCCAAACCCCATCTCCCCTTCCTGTCCACCCCTCTTCTCAGTCCAAGGGTTGGTGAGGTACCCATGAGCATCTATCTCATAGTACTGTTGTCCATCTTTACTCCTGACAGAAAGATTTGCCTGGTCCAAACTCCCAGTGCTATTACATTTTTTCACCAGAGGGGGTGCCAGGGAGCTAGGTGACAGCAGTGACGTCAGAGACAAACTACTAAGTGTCTCTGATAAACGTTCGCTGTTAAAAGCCTGACTGGATCCTTCGCCTCCCATCCCTATCCCACAATCGTCATCTGAAGGGTCCATAGAGTCTTGCCTTGGGCACCCGGGACTGGTGCTGCTGCCACAGCTGCTCTGGCTCCTCTGGTGCCCTCTAGTGGCTTGGAGGTTGAATGCTGTACTGCGGCCTCTCATTGAGGGGTGACCCAGCGATCTGAGGGTTTGTCGTGTTTCGT

Function

NR:

description
voltage-dependent T-type calcium channel subunit alpha-1I-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1631705 True 2130 lncRNA 0.42 1 17620347 17622476

Neighbor

gene id symbol gene type direction distance location
LOC110526262 LOC106590884 coding downstream 319150 17296873 ~ 17301197 (-)
LOC118940342 LOC106590876 coding downstream 323712 17279858 ~ 17296635 (-)
LOC110526382 LOC107087645 coding downstream 371799 17237261 ~ 17248548 (-)
LOC110495065 LOC106564434 coding downstream 473418 17142063 ~ 17146929 (-)
LOC110495066 rayl coding downstream 511680 17089024 ~ 17108667 (-)
LOC118940344 LOC106590712 coding upstream 100802 17723278 ~ 17727642 (-)
LOC118940345 LOC106590757 coding upstream 297745 17920221 ~ 17929855 (-)
LOC118940346 LOC106593718 coding upstream 596883 18219359 ~ 18239809 (-)
LOC118936554 trmt1 coding upstream 659951 18275795 ~ 18303884 (-)
LOC110511293 LOC106590640 coding upstream 705184 18327660 ~ 18346508 (-)
G1425222 NA non-coding downstream 6526 17613529 ~ 17613821 (-)
G1425219 NA non-coding downstream 11562 17606544 ~ 17608785 (-)
G1425218 NA non-coding downstream 14006 17606106 ~ 17606341 (-)
G1425217 NA non-coding downstream 14966 17605152 ~ 17605381 (-)
G1425213 NA non-coding downstream 23631 17596499 ~ 17596716 (-)
G1425225 NA non-coding upstream 156 17622632 ~ 17622965 (-)
G1425226 NA non-coding upstream 599 17623075 ~ 17623507 (-)
G1425230 NA non-coding upstream 6392 17628868 ~ 17631540 (-)
G1425247 NA non-coding upstream 46511 17668987 ~ 17672943 (-)
G1425253 NA non-coding upstream 59757 17682233 ~ 17683119 (-)
G1424547 NA other downstream 162843 17456929 ~ 17457504 (-)
LOC110494935 LOC106590780 other downstream 651992 16939303 ~ 16968595 (-)
G1424218 NA other downstream 681648 16855477 ~ 16938699 (-)
G1424227 NA other downstream 768861 16850751 ~ 16851486 (-)
G1424234 NA other downstream 847390 16770437 ~ 16772957 (-)
G1425321 NA other upstream 286589 17909065 ~ 17911376 (-)
G1425419 NA other upstream 697455 18319931 ~ 18326899 (-)
LOC110487190 LOC106564382 other upstream 737117 18359593 ~ 18494120 (-)
G1425652 NA other upstream 1003280 18625756 ~ 18627041 (-)
LOC110485574 LOC106564445 other upstream 1090753 18713229 ~ 18716461 (-)

Expression


Co-expression Network