G1428161 (LOC106564449)


Basic Information

Item Value
gene id G1428161
gene name LOC106564449
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 21626677 ~ 21627280 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1635205
TCATAGCCGTCCCCGAAGGAGGTCCTGGAGCTGCCGAGCCCGTAGCGGCTGGACCAGAGGACGCCTGAACAGGGACCCTGGCTGTGGTCACTGACATCCCAGCACTGGGCGTACTGATCCCCCCAGTGCCCCCCTGGTACACAGCCCGAGCCAGGGTCATCTGGGCTGGGGACATGGCTGGGGAGAGCTGTGTGGTGGAGGAGATGGGCTGCAAggccatggtggaggtggtggggcCGGCCTTGAGGATATAGGTAGTGGTGGGAGTAGTGGTCTTGGCCTTGTTGAGCGAGTTGGCTGCGGCGAAGGAGGACACAGGGATGTTGACCAGGGTTCCCGCCCCGCCGTTGGCCATGGCAGAGAGAGGCAGCTGGATGAGGAGCGGCTGGCCATTCTGGCCCACCACGTTGGAGCCCGAGGTGGTCTTGAGGAGCAGGGTGCCGGTGGGGCCGCTTTGGGAGGTGACGGTGCACAGGGAGGCGGAGCTAGAGGAGGTGGGGATCAGCTGCAGAATGGAGCCCTGTGTTACCATGGCAGTGGCCGTAGTGGTAGTGGGGACAGGTTTGGCCTGCTTCACCGG

Function

NR:

description
PREDICTED: activating transcription factor 7-interacting protein 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1635205 True 580 TUCP 0.65 2 21626677 21627280
Loading

Neighbor

gene id symbol gene type direction distance location
mb mb coding downstream 132256 21491234 ~ 21494421 (-)
LOC110493454 NA coding downstream 161579 21463000 ~ 21465098 (-)
LOC110493440 LOC106564549 coding downstream 187190 21429348 ~ 21439487 (-)
LOC110493441 sox10 coding downstream 209247 21411626 ~ 21417430 (-)
LOC110493443 NA coding downstream 217430 21407072 ~ 21409247 (-)
LOC110493463 LOC106588978 coding upstream 158886 21786166 ~ 21790195 (-)
trnaa-ugc-129 NA coding upstream 203610 21830890 ~ 21830965 (-)
LOC110493466 LOC103354157 coding upstream 223457 21850737 ~ 21851205 (-)
LOC110495103 LOC106598553 coding upstream 263401 21890681 ~ 21895100 (-)
LOC118940360 NA coding upstream 292354 21919634 ~ 21923538 (-)
G1427950 NA non-coding downstream 87805 21538666 ~ 21538872 (-)
G1427900 NA non-coding downstream 97202 21528898 ~ 21529475 (-)
G1427904 NA non-coding downstream 126790 21498755 ~ 21499887 (-)
G1427923 NA non-coding downstream 136644 21489810 ~ 21490033 (-)
G1427901 NA non-coding downstream 155634 21470665 ~ 21471043 (-)
G1428165 NA non-coding upstream 9611 21636891 ~ 21638651 (-)
G1428230 LOC106589277 non-coding upstream 135921 21763201 ~ 21768179 (-)
G1428285 LOC106588995 non-coding upstream 170661 21797941 ~ 21798486 (-)
G1428290 NA non-coding upstream 176727 21804007 ~ 21804208 (-)
G1428293 NA non-coding upstream 179804 21807084 ~ 21807422 (-)
G1427703 NA other downstream 615357 21007541 ~ 21032030 (-)
LOC110511666 LOC106589939 other downstream 839092 20785995 ~ 20787989 (-)
G1427608 NA other downstream 852302 20772526 ~ 20774375 (-)
G1427470 NA other downstream 1069785 20553196 ~ 20556892 (-)
G1428291 LOC106588995 other upstream 177051 21804331 ~ 21804660 (-)
G1428740 NA other upstream 712099 22339379 ~ 22340563 (-)
G1429642 NA other upstream 1627042 23254322 ~ 23254592 (-)
G1429643 NA other upstream 1627613 23254893 ~ 23255180 (-)
LOC110493468 cnnm2 other upstream 1725218 23233049 ~ 23353185 (-)

Expression

G1428161(LOC106564449) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.125.
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G1428161(LOC106564449) Expression in each Bioproject

Bar chart with 7 bars.
G1428161(LOC106564449) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.

Co-expression Network