G1433846


Basic Information

Item Value
gene id G1433846
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 27155584 ~ 27159240 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1641520
TTGGATTTTTACATTAGGATACATTTATGCACATCAGCAAATGGAGAGAAACTGTGATACTGCCAACATGGTCTTGTGAAATAATGTCTATTTGTTTTATGTGAAATGTATAGTTAATGAACAAACAGGCCAATGTTCCCTTTAAAAGAACATTATAGGATGCATGTTGACAATTATAACTGGGGAGAATTCAATTATAATGGTGAAGCTAATCCGAGTAACAGTTTAACACAGCAGCACATCCAAGACAGTTTTGAGCATTGTTGCGAAAGTTGGAAGATGAGTTCGGACGAGTGTTGACGACAACATCCAACAGGCCAAATACTTTAATCCATAACTATTAATAATCTATTAATCTGTAAACAATGATCATaacttgaagaaaaaaaacattaccGTAATATGGTCTGGGAGTGTTTTCAAATGAACTTTACAATCATTATTTTACAACAGccatcatgtacagtgccttccaaaagtattcacaccccttgactttttctattttgtgttacagccagaatttaaaaattgattcaattgagattgtgtcactggcttacacaATACCGCACAATGTTTAAGTAGAATTGTTTTTTTGAACTTTTTACAAATTTATTCAATGTAAAGCTGAAACGTATTGAATCAAAAAGTATTCAAACctgttgttatggcaagcctaaataaattcaggattGAAAATTAGCTTAAGTCACAATATCAGTtgtatggactcactgtgtgcaataatagtgcttAACATGATTTGAATAACTCTCTCAatcctgtaccccacacatacatatAAAAAAGGTCCCCGAAgctgagcagtgaatttcaaaacatattcgccacaaagaccagggaggttttcaaatgCCACGCAAAGGGTATCTATTGGTAGGTGGGTACAATtcaaataaaaagcagacattgaatatccctttgagcgtgGTGAAGTTAACACTTTGGATGGTATATAAATTGTGGTGGAAGATTTAGGTAACATAGATAATTAAGATGTCTTATCTGCATAATATGCTTATATGATATGCTTGTTATTAGAATGTATCCCTTTGGACTCTGGTGTTGGTAGTTGCACTTCCTTCCTCagctggggcccagagaggggagaagtcaGGCTCGTCTTTCACATGCCGctggtgctatgcagaatatcagaaagagAAATATGACAGGAGGGAatattgtcttcatatgtgaatgtgtctacctattctaaaccatgtgaagggatggcgcGGTTGATGGGGAACCACTTGTCTCCACAATGTCCGTGAGCCAGTCACTCCCTCCTTGGGGGAGATAAGGTCTGAGAAAAGATGTGGggtagtgtctggaaccattaCGTCATCTCTGATGTTGCACCGGTCCTGGGGGagtgtatgacctagaggctcacttcCCTCAGTGTCCAGGCGTGTGGTCAAGAAGGGGTTTTACTTGAGATGGAAGTATCTAGAGTTGACAATTGAGTTATGCCATAGAATGAATTGGTGTTTCTGTGCTTtgaagtaccaggaacgagatCGGAGCCTCGTCTTAGGGACCAAACTAAATAAGAACAGACTTCAAAGCAAATGCTATCTGGTGGGATACTCCTTTCTCATATATCAAGTTACACCCTGTGACCCATTCCATGCATCTGTTGTTTGTCAGGAAGACTAAAAGGGCATATATTTTCTATAAAAGATATGTATTCTTCGTATGTCAGAGCTACTCACCACAACACTTGGAAGTGTTGAGCCGACCAGCCTCATCATTATAGAAGCAATGACTCTATACTTTATTCGAAATGTATTAATAAGGAAAGCAATGTCCTGATTGGTGCTTGacctcacctctcctcattgATTAGAATTTCTACCAcacaatatacccagtcactacggagaggaaaccgttcagggatttcaccatgaggccacaCCCACCATTACAAAATGACTACAAAATatctgttttaaaatctatggcaagacttgaaaatggctgtctagcaatgatcaacaaccaaattgacagagtttgaagaatatgcaaatattatacaatccaggtgtggaaagctcttaacaCTTACCCAGAAAAATGTgtgctgtaatggctgccaaaggtgattctaacatgtattgattgactcaaggggttgaatacatatgtatttaattttcaaacatgatttcactttgccattatggggtattgtgggtagatgggtgagaatctATTTCCTccgttaaattcaggctgtaacaaccaAAAGTGAAACAAGTCAAGGGGTAGGAATACTTTATGAAGCCACTGTACATCATAGCCGATGTGAAATCCTACTTACCAAATGAGTGGGGTAAAAATGTGTCCAGTTTCCACCAAGCTGCCCCCTTCACCACCAGACAGAAAGAGGCAACAATGGCACACCACAGCATTCAACATTCATTACATTTGTATGCAACCAAATGGTGTAACAAATCTTGAGCAAGTACTTTAGAATAACTCTACAATACTCAAAACAATGTACAAATCTTGGAAAAACTCCCAAAATGCATTACTTCAGATTCAATAACTAGTTACTACTAAACGGTACATCCGGTGCAAGATACAGCCACACTATGGTAAGGGAATGGGTACTTACAGATATAACTGACCTGTTTCGCAAGAAATCTGTGTTTTAGGCTGAAAAGCAGATAAGGACATTACCATCAAAATAGACATGGGCTTACAAAAAGTTTCAAAGTAATGTTTTTTTTCGATTTTAATATGctatgcagtgtttcccctagtaTTTTTTTTCCAACAGCGGTGGCAAAGTTAGCGTGTGGGGGTATGGGGCATGACAAATGGCACATTTTAGAGGCCCTCCTCTCGGCCACAGAGAAACTGTAGCTGTTCTAAAactaattttctgcaattctacacattttgacatgaacatttgttttaaagctaattttctacaattctacacattttgccatggcttatgcATTGTTCCTAATTTAACTAAAATGACAAACCAAATCAAAAGTGGCCCTATatcatgacattttttttttattttactttcgCCAACTGTCTAGTCTTTATTTTGGCGATTTTTAGTCTTCAAATATATTGCACCATTATCGTTTCTATATTCCTGGTTTAAAATCTTTTGCAGTGGCGGCTACGGTTTAGCAGCGGCACAACGCCGCTGCTAAAtacatataggggaaacactgatgcACCATAGTGGAATAACACCAAATAAGGCCCTCTGACTTGAAAAGCTAAACACCCAGACATGAGTAGGTGGTTTAGGAAAAATACACCCGACATCaagtaaaatgtatatttatcATCAACCACTCACAGAGTATAGAGCACTTGCATGCAAATGTTAGTGAATCTAAGGTGAGGAAGATAAACTGATTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1641520 True 3436 lncRNA 0.38 2 27155584 27159240
Loading

Neighbor

gene id symbol gene type direction distance location
tnrc6c2 LOC106564661 coding upstream 6284 27054451 ~ 27149300 (+)
LOC110495152 NA coding upstream 206539 26929368 ~ 26949045 (+)
sept9b LOC106564665 coding upstream 227306 26844294 ~ 26928896 (+)
LOC110493562 LOC106595010 coding upstream 339882 26812439 ~ 26815702 (+)
LOC110493561 LOC106564667 coding upstream 355574 26758441 ~ 26800010 (+)
tefm LOC106564655 coding downstream 113742 27272982 ~ 27276208 (+)
utp6 LOC106564653 coding downstream 136629 27295869 ~ 27308012 (+)
LOC110493575 NA coding downstream 154924 27313574 ~ 27333248 (+)
LOC118940369 NA coding downstream 265212 27424452 ~ 27426672 (+)
LOC110515386 LOC106564710 coding downstream 334380 27493620 ~ 27496323 (+)
G1433838 NA non-coding upstream 42031 27110741 ~ 27113553 (+)
G1433835 NA non-coding upstream 46844 27106699 ~ 27108740 (+)
G1433780 NA non-coding upstream 88733 27003338 ~ 27066851 (+)
G1433756 NA non-coding upstream 174825 26968391 ~ 26980759 (+)
G1433855 NA non-coding downstream 16272 27175512 ~ 27231404 (+)
G1433900 NA non-coding downstream 95645 27254885 ~ 27258392 (+)
G1433902 NA non-coding downstream 102059 27261299 ~ 27261857 (+)
G1433906 LOC106564656 non-coding downstream 105743 27264983 ~ 27287348 (+)
G1433904 NA non-coding downstream 131132 27290372 ~ 27292130 (+)
LOC110493559 LOC106587120 other upstream 469943 26683052 ~ 26685644 (+)
G1432630 NA other upstream 1332321 25762966 ~ 25823263 (+)
LOC110493519 LOC106564707 other upstream 3290186 23701419 ~ 23866193 (+)
G1429776 NA other upstream 3707854 23447060 ~ 23447730 (+)
G1429775 NA other upstream 3708607 23446548 ~ 23446977 (+)
LOC118940374 LOC106587354 other downstream 377955 27534233 ~ 27540054 (+)
LOC110493581 LOC106564710 other downstream 383947 27543187 ~ 27547668 (+)
LOC118940376 LOC106564710 other downstream 394476 27549527 ~ 27555427 (+)
LOC110493582 LOC106564710 other downstream 439257 27595643 ~ 27602283 (+)

Expression

G1433846 Expression in all Baseline Samples

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G1433846 Expression in each Bioproject

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G1433846 Expression in each Sample
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Co-expression Network