G1435905 (LOC106564952)


Basic Information

Item Value
gene id G1435905
gene name LOC106564952
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 28674474 ~ 28688486 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1643943
tgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatttaagtTATTCCGTGGCTTAGTGAAGCAGAATAAAATGTAGTCCCACATAAAACATACATTTCCATCATTTTAGATGGAAAAATAAACtctataaaacattttaaatgctACTTTACTGAAATGCTAcatttctttgtgtttgtgtgtggtaatACTGGTGCTAATTAAAAACAAAAAGGAAAGTCCCTGAGATACTTTTTTGTGTATGTAATGTAAATACACAatttgtgtgtgtaagtgtataAATGTGTATGCATTATTCCGTTTAGGAGTCTGACTACATgtatgggtgtatgtgtgtgtgtgttcacgtgcACATGTGTGTCTACACTACTTCAACTCCAGGCGGTGCTCGCCGCGTGCAATGTGTGAGGAGAACTCGTAGCGGTCCCGGCTGCGATGGCCACATACATTGCACTCCAGTGGGTCACGGAAGCCATGGCAGCCCATGTGGATGGTGAACATGACGTAATCCAGAAACCACACCCTGCAGTGACCGCAGGGGTACACCGCCCCCGCTCCTGTACCTaccccaacccctacctccccctcGCTCCTTACCACCCTCAGAGACTCTAGGGGTGGCATGGAGAGCGCGTGGGCCTGGGTATGGGGGTGTGAGAGGCTGTTGTGGGGACTGGGCCCCAGCAAGTGCCCCAGGTTGTAGATGAGAGGCTGGGAGAGCTGGGCCCGATCGGTGTGGAGTGAGTCCATGCTAGGGTGGCCCTGGCTGGGCCGGGGCAGGTAGGCGAGACCGGTGCTCTGCTGCTGCTCCAGCTTGTGACCATTGGTGAGGGCCAGGGGGCTCATGTCAGCGCGGCTCAGGGGGATGGGGTAGGCCCTGTGGGGGGAGGCAGAGTCAGGGTCATGGCCTGTGTAGAGGGGCTGGTGGATGTGTTGGTTCTCGGATCCtggggaggtgaggggagggtgCATGACGTCAGAGTGGTGGATCAGCTCCCTTTTGAAGCTCAGGTCCAGACACATGCCGTTGTCCCCAGTGAACTTCTGTGGCATAGAGCTCTTGCGTTTGGCTACGTTGCTCGCCAACCTGTCCAGTAGCAGAGCGCGCTCCATGCCCATGTGAGTAGTCCTGGACACGTGGGTGTCCTCACCGgCTCTCTCAGCATTGCCTTTGTTCTGGATGTACACATGGCACCTCTCTCGGTGCTCTTCAAGGGAGCTGCGCTGCTTGTAACTGCGACCGCAGTGGTTGCACTTGTAGGGCTTCTCTATTGAGTGAGTGCGCAGGTGTCCGCTGAGGGCGTCTCGTCTGCGGCAGGCGTAGCTGCACATAGGGCACTTGAAGGGCTTCTCCCCGGAGTGCAGTTTGATGTGGCGAAGCAGGTTTCCCTTCTGGGTGAAGGAGGCACCACACTGGCTGCAGTGGAATGGACGTTCACCGGTGTGGCTTCGCTTGTGCACGAGCAGCACATTGATGCTGACGCAGGACAGGCCACAGATGTCACAGTTGAGCTTGCCTGCTGCCTGGCTGCGGGGTACTGCTGCGTACAACGAGGAGTTGGTGTGGGCGTCCTGCGGGCCTGTGCTCTCATACTTTACATAATCTGCCAGAGACAGGTCCTGTGGTTCGTTAAGggtttctccctcttcctccccttccccctcttcttctccttcgtCTTCCTCATCCCTTTCCTTctcatcttcttcctcttcttcataAAGGTAATTGTCTCGTTCACCTTCTTCTTCACTCTTGGGGTACTGATCATCATTATTGTCATACTCTTCCCTCTCAGTTTTCACGGGAACCCCATCTGTCATTCCCTCGTTTCCTGTGGGTTCTGAGCACTCCATTCCACTCTCTGAGGTCTTCTCTggggcctcctcttcctctccctgcctctccactgcctcttctcctccctccgcCTCCTCTGTCTGTGACCTCTCATCTGTCACAGCGGTGCTAACGTCCATCGTTTCATATTGTGATGACTTCAGCTCTTGTTTTACCTCTGTGTTCATCTTCAATGATTCTCTGTAACGTGTGTATCTTCCTCCTGATACTGAAGCGCTCACGTCCAGTTTTAAATTCACTTGTCTCTCCCGCCGTTCAGATTCCCTTCTCCGCCACTGGATCGGC

Function

NR:

description
zinc finger protein Aiolos-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1643943 True 2172 lncRNA 0.53 8 28674474 28688486

Neighbor

gene id symbol gene type direction distance location
LOC110493635 LOC100194498 coding downstream 3554 28651004 ~ 28670920 (-)
LOC110493634 LOC106564954 coding downstream 28919 28637012 ~ 28645555 (-)
LOC101268960 LOC106564996 coding downstream 47527 28624240 ~ 28626947 (-)
LOC110493630 LOC106564955 coding downstream 52243 28610385 ~ 28622231 (-)
LOC110493627 LOC106564957 coding downstream 113782 28555554 ~ 28560692 (-)
LOC110493637 LOC106564949 coding upstream 54339 28742825 ~ 28748702 (-)
LOC110493640 LOC106564948 coding upstream 73294 28761780 ~ 28763712 (-)
LOC110493641 ccd49 coding upstream 75655 28764141 ~ 28768448 (-)
LOC110493642 LOC106564946 coding upstream 81809 28770295 ~ 28784724 (-)
LOC110493650 LOC106564939 coding upstream 157395 28845881 ~ 28848504 (-)
G1435869 NA non-coding downstream 95789 28578453 ~ 28578685 (-)
G1435867 NA non-coding downstream 99255 28573837 ~ 28575219 (-)
G1435865 NA non-coding downstream 102668 28571481 ~ 28571806 (-)
G1435458 NA non-coding downstream 133691 28540564 ~ 28540783 (-)
G1435385 NA non-coding downstream 147408 28522740 ~ 28527066 (-)
G1435903 NA non-coding upstream 485 28688971 ~ 28754020 (-)
G1435933 LOC106564951 non-coding upstream 15769 28704255 ~ 28774639 (-)
G1435935 NA non-coding upstream 19987 28708473 ~ 28709421 (-)
LOC110493648 LOC106564936 non-coding upstream 171476 28859182 ~ 28886611 (-)
G1436041 NA non-coding upstream 239278 28927764 ~ 28928014 (-)
G1435467 NA other downstream 126918 28547273 ~ 28547556 (-)
LOC110495156 LOC106564766 other downstream 307233 28366452 ~ 28369020 (-)
LOC110493621 LOC106564766 other downstream 345597 28328130 ~ 28328877 (-)
G1435199 LOC106587683 other downstream 473792 28189019 ~ 28200682 (-)
G1435257 NA other downstream 491913 28181042 ~ 28182561 (-)
G1436694 NA other upstream 923766 29612252 ~ 29612608 (-)
LOC110495137 LOC106564911 other upstream 1249840 29926378 ~ 29979179 (-)
G1437411 NA other upstream 1362116 30050602 ~ 30114123 (-)
G1437507 NA other upstream 1552964 30241450 ~ 30243706 (-)
G1437609 NA other upstream 1778837 30467323 ~ 30468772 (-)

Expression


Co-expression Network