G1435933 (LOC106564951)


Basic Information

Item Value
gene id G1435933
gene name LOC106564951
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 28704255 ~ 28774639 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1643979
gaggggggggggggggggggggAGGAGCTGGGGAAGAGCGAGGAGAACGAGGTGGAGGAGGTTAGGGAAGGAGGTGGAGCAGGAGCCGTGTGGTGATGGTGCTGACGGTACTCCTCCTCTAGCCTCTCCGTCCGCTCCCGGTTCTTGCTCCCCCGCGGGCGCCCCGGTCCGTGCCGGCTCTTCTTGTTGCCACGGTGCCTCCTCTCCCGGTGTGTTGGCAGCGGTGGTGGGGGCGTGGTCTTGTCTTCCTCTAGGTCGGCCTCCTCCAGTATAGGGGGCGTGGCTAGGTGCGGGGACTTGAGAAGCGACTTTGAAAGCTTGTAGTCCcccgaggaagaggaggaggagattttGCGGAGCTTGCTGCTGCCGCCGCCTAGCCCACCTGAGGAGGAAGTGATGCGCATGATGGAGCCGAAGGTGGAGATTGTGACCTTGGTCTCAAAGGAGTTGGCCTCGCCCTCTGACCTCTCGTGACCCTGCGACGACCCTCCGTGAGGTCCGTCAACTGGGGTCAGGGCCGGGGGCTGCAGAGAGGCCTTGTTGTGATATTTACTATTGTCcaattcctcctcctcttctttctcttcttccttttcctcctcctcttcttcgtcATCTTCCTCAGGCGCTGTCCATCTGGTCCGCTCGTCACGGTGCTCCTCGGCACCATGCTCGTCCGCTCCTCGGTCGGGGTCGCACTCCAAACGAGAGGTAGAGGAGAACGGGAGGAAGTCTTGGGAGCCG

Function

NR:

description
protein AF-17-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1643979 True 747 lncRNA 0.63 2 28704255 28774639

Neighbor

gene id symbol gene type direction distance location
LOC110493635 LOC100194498 coding downstream 33335 28651004 ~ 28670920 (-)
LOC110493634 LOC106564954 coding downstream 58700 28637012 ~ 28645555 (-)
LOC101268960 LOC106564996 coding downstream 77308 28624240 ~ 28626947 (-)
LOC110493630 LOC106564955 coding downstream 82024 28610385 ~ 28622231 (-)
LOC110493627 LOC106564957 coding downstream 143563 28555554 ~ 28560692 (-)
LOC110493650 LOC106564939 coding upstream 71242 28845881 ~ 28848504 (-)
LOC110493648 LOC106564936 coding upstream 84543 28859182 ~ 28886611 (-)
LOC110493647 LOC106564936 coding upstream 123898 28898537 ~ 28922576 (-)
vig-2 NA coding upstream 162032 28936671 ~ 28939970 (-)
LOC110493651 LOC106588089 coding upstream 196465 28971104 ~ 28987462 (-)
G1435905 LOC106564952 non-coding downstream 15769 28674474 ~ 28688486 (-)
G1435869 NA non-coding downstream 125570 28578453 ~ 28578685 (-)
G1435867 NA non-coding downstream 129036 28573837 ~ 28575219 (-)
G1435865 NA non-coding downstream 132449 28571481 ~ 28571806 (-)
G1435458 NA non-coding downstream 163472 28540564 ~ 28540783 (-)
G1436041 NA non-coding upstream 153125 28927764 ~ 28928014 (-)
G1436056 NA non-coding upstream 182700 28957339 ~ 28957786 (-)
G1436104 NA non-coding upstream 284730 29059369 ~ 29059568 (-)
G1435467 NA other downstream 156699 28547273 ~ 28547556 (-)
LOC110495156 LOC106564766 other downstream 337014 28366452 ~ 28369020 (-)
LOC110493621 LOC106564766 other downstream 375378 28328130 ~ 28328877 (-)
G1435199 LOC106587683 other downstream 503573 28189019 ~ 28200682 (-)
G1435257 NA other downstream 521694 28181042 ~ 28182561 (-)
G1436694 NA other upstream 837613 29612252 ~ 29612608 (-)
LOC110495137 LOC106564911 other upstream 1163687 29926378 ~ 29979179 (-)
G1437411 NA other upstream 1275963 30050602 ~ 30114123 (-)
G1437507 NA other upstream 1466811 30241450 ~ 30243706 (-)
G1437609 NA other upstream 1692684 30467323 ~ 30468772 (-)

Expression


Co-expression Network