G1438880


Basic Information

Item Value
gene id G1438880
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 31702494 ~ 31705164 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1647204
CAGGACGACCAGGACGATGACTATGACCTGGTCAGAGGCAGGGTCGGCTGACTCCTCCTCCATCACATGCTCCAGCCCCGCCCCAAACACCTTCTCTAGCTCTGCCTTCACCGTGCCCGCCTCGCTCTGCAGCTTGCTGTGGGCAACATCAGAGAACGGCCAttaaatcaaagtgtatttgtcacataaacatggttagcagatgttaatgtaaGTATAgcgcaaaatgcttgtgcttctagttccgacattgcagtaataaccaacgagtaatctaacctaacaattccacaactaccatatacacataagtgtaaagggatgaagaatatgtacataaaaataaatgaatgagtgatggtacagaacggcataggcaagatgcagtagatggtatcgagtatatacatacgagatgagtaatgtaggatggcATTGTTTTAAGTGGCTagtaatacatttttacatacattattaaagtggctggagttgagtcagtatgttggcagcagccactcactgttagtggtggctgtttaacagtctgatggccttgagatataagctgtttttcagtctcggtccctgcacctgtactgacctcgccttctgggtgatagcggcgtgaacaggcagtggctcgggtggttgttgcccttgatgatctttatggccttcctgtgacattgggtggtgtaggtgtcctggagggcaggtagtttgactccggtgatgcgttgtgcagacctcactaccctctggagagccttacggttgtggacggagcagttgccgtaccaggcggtgatacagcccgacaggatgctctcgattgtgcatctgtagaagtctgtgagtgcttttggtgacaagacaaatttattcagcctcctgaggttgaagaggtgctgctgtgccttcttcaccacgctgtctgtttgggtggaccatttcagtttgtccgtgataaaacttactaccctctccacttctgtcctgtcgatgtggatagggggtgctccctctgctgtttcctgaagtccacgatcatctccttagttttgttgacattgagtgtgaggttattttcctgacactactctccgagggccctcacctcatccctgtaggccatctcgtcgatgttggtaatcaagcctaccactgtagtgtcgtccgcaaacttgatgattgagttggaggcgtgcatggccatgcagtcgtgggtgaacagagagtaaaggagagggctcataacgcacccttgtggggccccagtgttgaggatcagcggggtggagatgttgttacctaccctcaccacctgggggcgacccatcaggaagtccagtacccagttgcacagggcggggtcgagacccagggcctcgagcttgatgatgagtttggagggtactatggtgttaaatgctgagctgtagtcgatgaacagcattgtcacataggtgttcctcttgtccagatgggttagggcagtgtgatgcgattgcgttgtctgtggacctatttgggcggtaagcaaattggagtgggtctagggtgtcaggtagggtggaggtgatatggtccttgactagtctctcaaagcacttcatgatgacggaagtgagtgctacggggcggtagtcgtttagctcagttaccttagctttcttgggaacagggacaatggtggccctcttgaagcatgtgggaacagcagactgggataaggattgattgaatatgtccgtaaacacaccagccagctggtctgcgcattaGGGGCTTATTCTCAAGAATGCAACGTCACATTGCAGATTTTTCCGATTAGATTTGTATCGTGTAGAACAGACATGGATGTTCATCGTGCTGAATAGAAAATTGTGGAAGCAATGTTGCGTCCAGTCATTGTATGTCTATTTCAACTACTAAAGAATGTTCCACAAAAATTCCCTTAATGAGACCAACCCCAGACTCGCCATCCTCAAAGTTAAACTTTAACCAACAACGGCTTTGATTTTCTCATTATAGGATGGCCTACTTTGTTGTGGATTAAGTGATTTTCAACAACACATTGATCTTACCTTTTGACGTCTTTGGCAGGGATGACTTCCCCGCTGTTCACGGCAATGAAGCTGACGTACGTCCTGGCGGCGCTCCCAGATTCCCGGGACGCAACAGCTCCTCTGCTGGTGCTGGAAATCTCTATCACCTTCACGGTCCAGCCCAGAACTCGCCCTAAAGACTCTTCCATCTCAGGGACCTTCTTCTCCACAACATTGGTGGCCTGGTTGAGGGAGATGACTACGACATCATTACTGGCACTTCCCTGCACGTCCACctccaccctGGTTGTAGCATGGAGTCCTTTAGGATCTGTGGCCTTCACCAGGACGGTGGTTGTCTTTCCTTCTAATCCCAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1647204 True 2425 TUCP 0.49 3 31702494 31705164

Neighbor

gene id symbol gene type direction distance location
LOC110493162 LOC106564875 coding upstream 10273 31626199 ~ 31692221 (+)
LOC118940677 NA coding upstream 32140 31670221 ~ 31670354 (+)
LOC118940667 NA coding upstream 53152 31649212 ~ 31649342 (+)
trnaa-ugc-132 NA coding upstream 56662 31645752 ~ 31645832 (+)
LOC110493719 LOC100380723 coding upstream 77665 31611439 ~ 31624829 (+)
LOC110493722 comd1 coding downstream 17871 31723035 ~ 31743199 (+)
LOC110493723 LOC106564859 coding downstream 39367 31744531 ~ 31758155 (+)
LOC110493724 LOC106564991 coding downstream 53366 31758530 ~ 31769160 (+)
LOC110493725 LOC106564858 coding downstream 87291 31792455 ~ 31836455 (+)
cmdg LOC106585868 coding downstream 155179 31860343 ~ 31871765 (+)
G1438854 NA non-coding upstream 91483 31610796 ~ 31611011 (+)
G1438852 NA non-coding upstream 92640 31609564 ~ 31609854 (+)
G1438820 NA non-coding upstream 103041 31599093 ~ 31599453 (+)
G1438819 NA non-coding upstream 103687 31598542 ~ 31598807 (+)
G1438886 LOC106564863 non-coding downstream 4768 31709932 ~ 31711208 (+)
G1438952 NA non-coding downstream 103312 31808476 ~ 31808752 (+)
G1438954 NA non-coding downstream 105022 31810186 ~ 31810424 (+)
G1438992 NA non-coding downstream 199626 31904790 ~ 31905014 (+)
G1437911 LOC106564885 other upstream 768910 30927247 ~ 30933584 (+)
G1437734 NA other upstream 1036487 30665171 ~ 30666007 (+)
G1437183 LOC106564893 other upstream 1287560 30410743 ~ 30414934 (+)
LOC110493688 LOC106564992 other upstream 1306844 30390554 ~ 30395746 (+)
G1436967 NA other upstream 1664431 30033900 ~ 30038063 (+)
G1438941 LOC106564856 other downstream 201358 31906522 ~ 31907498 (+)
LOC110493164 LOC106564854 other downstream 268276 31973440 ~ 31976221 (+)
ero1b LOC106586106 other downstream 668451 32352949 ~ 32378308 (+)
rbm34 LOC106564828 other downstream 895072 32562173 ~ 32662021 (+)
G1439962 LOC106564826 other downstream 1007696 32712860 ~ 32766707 (+)

Expression


Co-expression Network