Gene
RNA
| Item | Value |
|---|---|
| gene id | G1438941 |
| gene name | LOC106564856 |
| gene type | unknown |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048581.1 |
| NCBI id | CM023235.2 |
| chromosome length | 95212422 |
| location | 31906522 ~ 31907498 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| vacuolar protein sorting-associated protein 54-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1647270 | True | 977 | TUCP | 0.53 | 1 | 31906522 | 31907498 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110493726 | ugpa | coding | upstream | 14426 | 31873655 ~ 31892096 (+) |
| cmdg | LOC106585868 | coding | upstream | 34757 | 31860343 ~ 31871765 (+) |
| LOC110493725 | LOC106564858 | coding | upstream | 70067 | 31792455 ~ 31836455 (+) |
| LOC110493724 | LOC106564991 | coding | upstream | 137362 | 31758530 ~ 31769160 (+) |
| LOC110493723 | LOC106564859 | coding | upstream | 149213 | 31744531 ~ 31758155 (+) |
| LOC110493164 | LOC106564854 | coding | downstream | 66739 | 31973440 ~ 31976221 (+) |
| LOC110493728 | LOC106585894 | coding | downstream | 69097 | 31976595 ~ 31990436 (+) |
| LOC110493731 | LOC106585927 | coding | downstream | 110926 | 32018424 ~ 32042767 (+) |
| LOC110493733 | LOC106564847 | coding | downstream | 201148 | 32108646 ~ 32146142 (+) |
| etaa1 | LOC106564845 | coding | downstream | 262807 | 32170305 ~ 32174711 (+) |
| G1438943 | NA | non-coding | upstream | 405 | 31905297 ~ 31906117 (+) |
| G1438992 | NA | non-coding | upstream | 1508 | 31904790 ~ 31905014 (+) |
| G1438954 | NA | non-coding | upstream | 96098 | 31810186 ~ 31810424 (+) |
| G1438952 | NA | non-coding | upstream | 97770 | 31808476 ~ 31808752 (+) |
| G1438993 | LOC106585841 | non-coding | downstream | 569 | 31908067 ~ 31908297 (+) |
| G1438994 | NA | non-coding | downstream | 1341 | 31908839 ~ 31909342 (+) |
| G1438996 | NA | non-coding | downstream | 2901 | 31910399 ~ 31910791 (+) |
| G1438997 | NA | non-coding | downstream | 3498 | 31910996 ~ 31911240 (+) |
| G1439250 | NA | non-coding | downstream | 84256 | 31991754 ~ 32037811 (+) |
| G1438880 | NA | other | upstream | 201358 | 31702494 ~ 31705164 (+) |
| G1437911 | LOC106564885 | other | upstream | 972938 | 30927247 ~ 30933584 (+) |
| G1437734 | NA | other | upstream | 1240515 | 30665171 ~ 30666007 (+) |
| G1437183 | LOC106564893 | other | upstream | 1491588 | 30410743 ~ 30414934 (+) |
| LOC110493688 | LOC106564992 | other | upstream | 1510872 | 30390554 ~ 30395746 (+) |
| ero1b | LOC106586106 | other | downstream | 466117 | 32352949 ~ 32378308 (+) |
| rbm34 | LOC106564828 | other | downstream | 692738 | 32562173 ~ 32662021 (+) |
| G1439962 | LOC106564826 | other | downstream | 805362 | 32712860 ~ 32766707 (+) |
| G1440066 | NA | other | downstream | 889600 | 32797098 ~ 32797432 (+) |
