G1439346


Basic Information

Item Value
gene id G1439346
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 32179767 ~ 32182012 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1647739
ACTTTCAAATCTTTTATTTCTCTTTTTCATATATGAAGTTTCAATGGTTCCCACAGCAGATGCAGCATGCAGAGATGGATAAGAAGAAAAGTAAAACCTAAGACTGAAACTGTTTTTGCCTCCACCCTATACCATCCcataataaaacacacacacacacacacagagatcccTTTCATCCAATAGTGGACATATTTAGCACAAACCTAAAAATAAACAAAGGAGGGAGCACTAATACTACCGTTTGTATAACAaatatctgtaaaaaaaAAAAAAAAACTAACATCTTGAATGGTTTCCACCTGAAATGGAGCTGGTAGTCTACTCTGGGGCATAAGTGAAGCTTTGCTGGAATAGAAGTGACAGAAATATCCAAAAGATTACAGTTGTTTAGAATAACAGGTACATGTAGTGGAGTTACTTTTAGTCATTTCCATATTAATTCAACATTtaccaatctttttttttttggcaACATCCATATATATGTCATTTTCATTCATGTTATAATATATTAACATTAAGATTCATATGTAAACAGAGCTTTTCAAAAAAATGGATCTACATGCACAaggaaaacaagagagagagcccTCCGTGTCATGCGAGCACATCACAAGACTTCGGGGCCTTTTAGGATCTGATAAGAACCATCGTCGTGCGGCACGCCGTCGAAGAAAACAGCGGCACGAGGTTGGCGGGCGCGTGCGGCACAGGATCACGCACTTGATCACCCGCCCGTTGGTGCATTCAGTTGAGCAAAAAAAGCAGAGCCTCAAACTGAAATACGTTTTAATTTCATAAAATGTATAGATACAAATAAAAACCTGTTCTGTCGTGTCCCTTAtctctgtgtaaaaaaaaaacattggtagCTTTGTAATAAAATGCCCTTGTTGGTTGCATCTTCAACAaaactcaagaaaacaaaaacaaaagaatGGTCAGAGGTAGGGAGGAAGAGGGACACCTGTGACCTTGCACTATTACGAAAACTCACAGCAAGAGTCCATACAATGTTTGAGAAACCGAATTAAAGATGTTCATGAAATAAGCAAATGACATTGTCGAGAAGGCAAAATGTGTACGTTGAAATCAACGCCTCTCATAAGCCTAACCAACTTAACATCCCTCAATGTCCCAACTATAGCCTACTTACTGTAAGTTACCTCAGCTCTGCCTGTAGTTAAATGAAACATTTACCATATCACAAACATTTAAACCAAAAGCACTCATCTCTACTTCTATATGATAGTCTGTAACCAATCCACCACATCTGTAACTTAACATGGCCGACGTTAAAGCAATAAATACAAAACACATTATTCTAACGGCCTGTGATGTCACACCATCCAGAATGAAGACGTGCTTTTTGTTGGAATATTATTCGCATAACCAACCAGTGACTCAAAAAAAGACTTGTCCTTGAAGTAGACCATAAGCTTGTATGTGCATAAATGTAAATATTATTTCCTCTAACCCACTGCATCTTCAAAAGCAAGATGATCGATGTCCCTGACAATATAAACATGTATAGtgcacaatcccccccccccttattaAAAAAGCTGTCTTAAACCTAGCTGTTCAAAATATTGAGTGAAAGTAGAAGGAAAAGCATTAGCCTTGAAAATGTAAATCGGATTGTTTGAATCGTGCATTGGGCACATTGAAATAAGCAATTCTACCGAATTTCGATAGACGATATATACCATTATATTCAACCGGTTTATAATATGTTCTGATTGGCACTTCATGCTCTATTTTTGTGTTGTGTTGAAATCAAGTACATCACAGTTAACTACACGCATCCCCCCCAAAAAGCCAAGACCAAAATAAATATGACAAAATCCCAACTGCCtcaaaatgaaagaaaaagaaacacactaaccttcctccaccaaactgaaACACTCACTCAACGATAAAAATCTGTCCTTCAGGCTTTTAAAGTGCTACACCGGGTTATTGAGAGAATTCATGTTCAATAACACTTACAAATGGTTGGCTTCAGAAGGCTCGGGTTGGGGAAAAAAAAGGTGGCTTCACAGAGGAAAATACACAGAGAGCGTTGCTGAATGACACCTTGAGCAGATCCTCAGAAATGGAGAAGAAAGCGAAAAGGTGTTTTGAGGGGGCCCGTGAGGTCAGTCACACGTCCACAACCATCTTTTTGTGTATGTCTAATCCTCC
>TU1647740
ACTTTCAAATCTTTTATTTCTCTTTTTCATATATGAAGTTTCAATGGTTCCCACAGCAGATGCAGCATGCAGAGATGGATAAGAAGAAAAGTAAAACCTAAGACTGAAACTGTTTTTGCCTCCACCCTATACCATCCcataataaaacacacacacacacacacagagatcccTTTCATCCAATAGTGGACATATTTAGCACAAACCTAAAAATAAACAAAGGAGGGAGCACTAATACTACCGTTTGTATAACAaatatctgtaaaaaaaAAAAAAAAACTAACATCTTGAATGGTTTCCACCTGAAATGGAGCTGGTAGTCTACTCTGGGGCATAAGTGAAGCTTTGCTGGAATAGAAGTGACAGAAATATCCAAAAGATTACAGTTGTTTAGAATAACAGGTACATGTAGTGGAGTTACTTTTAGTCATTTCCATATTAATTCAACATTtaccaatctttttttttttggcaACATCCATATATATGTCATTTTCATTCATGTTATAATATATTAACATTAAGATTCATATGTAAACAGAGCTTTTCAAAAAAATGGATCTACATGCACAaggaaaacaagagagagagcccTCCGTGTCATGCGAGCACATCACAAGACTTCGGGGCCTTTTAGGATCTGATAAGAACCATCGTCGTGCGGCACGCCGTCGAAGAAAACAGCGGCACGAGGTTGGCGGGCGCGTGCGGCACAGGATCACGCACTTGATCACCCGCCCGTTGGTGCATTCAGTTGAGCAAAAAAAGCAGAGCCTCAAACTGAAATACGTTTTAATTTCATAAAATGTATAGATACAAATAAAAACCTGTTCTGTCGTGTCCCTTAtctctgtgtaaaaaaaaaacattggtagCTTTGTAATAAAATGCCCTTGTTGGTTGCATCTTCAACAaaactcaagaaaacaaaaacaaaagaatGGTCAGAGGTAGGGAGGAAGAGGGACACCTGTGACCTTGCACTATTACGAAAACTCACAGCAAGAGTCCATACAATGTTTGAGAAACCGAATTAAAGATGTTCATGAAATAAGCAAATGACATTGTCGAGAAGGCAAAATGTGTACGTTGAAATCAACGCCTCTCATAAGCCTAACCAACTTAACATCCCTCAATGTCCCAACTATAGCCTACTTACTGTAAGTTACCTCAGCTCTGCCTGTAGTTAAATGAAACATTTACCATATCACAAACATTTAAACCAAAAGCACTCATCTCTACTTCTATATGATAGTCTGTAACCAATCCACCACATCTGTAACTTAACATGGCCGACGTTAAAGCAATAAATACAAAACACATTATTCTAACGGCCTGTGATGTCACACCATCCAGAATGAAGACGTGCTTTTTGTTGGAATATTATTCGCATAACCAACCAGTGACTCAAAAAAAGACTTGTCCTTGAAGTAGACCATAAGCTTGTATGTGCATAAATGTAAATATTATTTCCTCTAACCCACTGCATCTTCAAAAGCAAGATGATCGATGTCCCTGACAATATAAACATGTATAGtgcacaatcccccccccccttattaAAAAAGCTGTCTTAAACCTAGCTGTTCAAAATATTGAGTGAAAGTAGAAGGAAAAGCATTAGCCTTGAAAATGTAAATCGGATTGTTTGAATCGTGCATTGGGCACATTGAAATAAGCAATTCTACCGAATTTCGATAGACGATATATACCATTATATTCAACCGGTTTATAATATGTTCTGATTGGCACTTCATGCTCTATTTTTGTGTTGTGTTGAAATCAAGTACATCACAGTTAACTACACGCATCCCCCCCAAAAAGCCAAGACCAAAATAAATATGACAAAATCCCAACTGCCtcaaaatgaaagaaaaagaaacacactaaccttcctccaccaaactgaaACACTCACTCAACGATAAAAATCTGTCCTTCAGGCTTTTAAAGTGCTACACCGGGTTATTGAGAGAATTCATGTTCAATAACACTTACAAATGGTTGGCTTCAGAAGGCTCGGGTTGGGGAAAAAAAAGGTGGCTTCACAGAGGAAAATACACAGAGAGCGTTGCTGAATGACACCTTGAGCAGATCCTCAGAAATGGAGAAGAAAGCGAAAAGGTGTTTTGAGGGGGCCCGTGAGGTCAGTCACACGTCCACAACCATCTTTTTGTGTATGTCTAATCCTCCCACCACCTAATGGAAGACAGAGGGGCAAGA
>TU1647741
ACTTTCAAATCTTTTATTTCTCTTTTTCATATATGAAGTTTCAATGGTTCCCACAGCAGATGCAGCATGCAGAGATGGATAAGAAGAAAAGTAAAACCTAAGACTGAAACTGTTTTTGCCTCCACCCTATACCATCCcataataaaacacacacacacacacacagagatcccTTTCATCCAATAGTGGACATATTTAGCACAAACCTAAAAATAAACAAAGGAGGGAGCACTAATACTACCGTTTGTATAACAaatatctgtaaaaaaaaAAAAAAAAACTAACATCTTGAATGGTTTCCACCTGAAATGGAGCTGGTAGTCTACTCTGGGGCATAAGTGAAGCTTTGCTGGAATAGAAGTGACAGAAATATCCAAAAGATTACAGTTGTTTAGAATAACAGGTACATGTAGTGGAGTTACTTTTAGTCATTTCCATATTAATTCAACATTtaccaatctttttttttttggcaACATCCATATATATGTCATTTTCATTCATGTTATAATATATTAACATTAAGATTCATATGTAAACAGAGCTTTTCAAAAAAATGGATCTACATGCACAaggaaaacaagagagagagcccTCCGTGTCATGCGAGCACATCACAAGACTTCGGGGCCTTTTAGGATCTGATAAGAACCATCGTCGTGCGGCACGCCGTCGAAGAAAACAGCGGCACGAGGTTGGCGGGCGCGTGCGGCACAGGATCACGCACTTGATCACCCGCCCGTTGGTGCATTCAGTTGAGCAAAAAAAGCAGAGCCTCAAACTGAAATACGTTTTAATTTCATAAAATGTATAGATACAAATAAAAACCTGTTCTGTCGTGTCCCTTAtctctgtgtaaaaaaaaaacattggtagCTTTGTAATAAAATGCCCTTGTTGGTTGCATCTTCAACAaaactcaagaaaacaaaaacaaaagaatGGTCAGAGGTAGGGAGGAAGAGGGACACCTGTGACCTTGCACTATTACGAAAACTCACAGCAAGAGTCCATACAATGTTTGAGAAACCGAATTAAAGATGTTCATGAAATAAGCAAATGACATTGTCGAGAAGGCAAAATGTGTACGTTGAAATCAACGCCTCTCATAAGCCTAACCAACTTAACATCCCTCAATGTCCCAACTATAGCCTACTTACTGTAAGTTACCTCAGCTCTGCCTGTAGTTAAATGAAACATTTACCATATCACAAACATTTAAACCAAAAGCACTCATCTCTACTTCTATATGATAGTCTGTAACCAATCCACCACATCTGTAACTTAACATGGCCGACGTTAAAGCAATAAATACAAAACACATTATTCTAACGGCCTGTGATGTCACACCATCCAGAATGAAGACGTGCTTTTTGTTGGAATATTATTCGCATAACCAACCAGTGACTCAAAAAAAGACTTGTCCTTGAAGTAGACCATAAGCTTGTATGTGCATAAATGTAAATATTATTTCCTCTAACCCACTGCATCTTCAAAAGCAAGATGATCGATGTCCCTGACAATATAAACATGTATAGtgcacaatcccccccccccttattaAAAAAGCTGTCTTAAACCTAGCTGTTCAAAATATTGAGTGAAAGTAGAAGGAAAAGCATTAGCCTTGAAAATGTAAATCGGATTGTTTGAATCGTGCATTGGGCACATTGAAATAAGCAATTCTACCGAATTTCGATAGACGATATATACCATTATATTCAACCGGTTTATAATATGTTCTGATTGGCACTTCATGCTCTATTTTTGTGTTGTGTTGAAATCAAGTACATCACAGTTAACTACACGCATCCCCCCCAAAAAGCCAAGACCAAAATAAATATGACAAAATCCCAACTGCCtcaaaatgaaagaaaaagaaacacactaaccttcctccaccaaactgaaACACTCACTCAACGATAAAAATCTGTCCTTCAGGCTTTTAAAGTGCTACACCGGGTTATTGAGAGAATTCATGTTCAATAACACTTACAAATGGTTGGCTTCAGAAGGCTCGGGTTGGGGAAAAAAAAGGTGGCTTCACAGAGGAAAATACACAGAGAGCGTTGCTGAATGACACCTTGAGCAGATCCTCAGAAATGGAGAAGAAAGCGAAAAGGTGTTTTGAGGGGGCCCGTGAGGTCAGTCACACGTCCACAACCATCTTTTTGTGTATGTCTAATCCTCC
>TU1647742
ACTTTCAAATCTTTTATTTCTCTTTTTCATATATGAAGTTTCAATGGTTCCCACAGCAGATGCAGCATGCAGAGATGGATAAGAAGAAAAGTAAAACCTAAGACTGAAACTGTTTTTGCCTCCACCCTATACCATCCcataataaaacacacacacacacacacagagatcccTTTCATCCAATAGTGGACATATTTAGCACAAACCTAAAAATAAACAAAGGAGGGAGCACTAATACTACCGTTTGTATAACAaatatctgtaaaaaaaaaAAAAAAAAACTAACATCTTGAATGGTTTCCACCTGAAATGGAGCTGGTAGTCTACTCTGGGGCATAAGTGAAGCTTTGCTGGAATAGAAGTGACAGAAATATCCAAAAGATTACAGTTGTTTAGAATAACAGGTACATGTAGTGGAGTTACTTTTAGTCATTTCCATATTAATTCAACATTtaccaatctttttttttttggcaACATCCATATATATGTCATTTTCATTCATGTTATAATATATTAACATTAAGATTCATATGTAAACAGAGCTTTTCAAAAAAATGGATCTACATGCACAaggaaaacaagagagagagcccTCCGTGTCATGCGAGCACATCACAAGACTTCGGGGCCTTTTAGGATCTGATAAGAACCATCGTCGTGCGGCACGCCGTCGAAGAAAACAGCGGCACGAGGTTGGCGGGCGCGTGCGGCACAGGATCACGCACTTGATCACCCGCCCGTTGGTGCATTCAGTTGAGCAAAAAAAGCAGAGCCTCAAACTGAAATACGTTTTAATTTCATAAAATGTATAGATACAAATAAAAACCTGTTCTGTCGTGTCCCTTAtctctgtgtaaaaaaaaaacattggtagCTTTGTAATAAAATGCCCTTGTTGGTTGCATCTTCAACAaaactcaagaaaacaaaaacaaaagaatGGTCAGAGGTAGGGAGGAAGAGGGACACCTGTGACCTTGCACTATTACGAAAACTCACAGCAAGAGTCCATACAATGTTTGAGAAACCGAATTAAAGATGTTCATGAAATAAGCAAATGACATTGTCGAGAAGGCAAAATGTGTACGTTGAAATCAACGCCTCTCATAAGCCTAACCAACTTAACATCCCTCAATGTCCCAACTATAGCCTACTTACTGTAAGTTACCTCAGCTCTGCCTGTAGTTAAATGAAACATTTACCATATCACAAACATTTAAACCAAAAGCACTCATCTCTACTTCTATATGATAGTCTGTAACCAATCCACCACATCTGTAACTTAACATGGCCGACGTTAAAGCAATAAATACAAAACACATTATTCTAACGGCCTGTGATGTCACACCATCCAGAATGAAGACGTGCTTTTTGTTGGAATATTATTCGCATAACCAACCAGTGACTCAAAAAAAGACTTGTCCTTGAAGTAGACCATAAGCTTGTATGTGCATAAATGTAAATATTATTTCCTCTAACCCACTGCATCTTCAAAAGCAAGATGATCGATGTCCCTGACAATATAAACATGTATAGtgcacaatcccccccccccttattaAAAAAGCTGTCTTAAACCTAGCTGTTCAAAATATTGAGTGAAAGTAGAAGGAAAAGCATTAGCCTTGAAAATGTAAATCGGATTGTTTGAATCGTGCATTGGGCACATTGAAATAAGCAATTCTACCGAATTTCGATAGACGATATATACCATTATATTCAACCGGTTTATAATATGTTCTGATTGGCACTTCATGCTCTATTTTTGTGTTGTGTTGAAATCAAGTACATCACAGTTAACTACACGCATCCCCCCCAAAAAGCCAAGACCAAAATAAATATGACAAAATCCCAACTGCCtcaaaatgaaagaaaaagaaacacactaaccttcctccaccaaactgaaACACTCACTCAACGATAAAAATCTGTCCTTCAGGCTTTTAAAGTGCTACACCGGGTTATTGAGAGAATTCATGTTCAATAACACTTACAAATGGTTGGCTTCAGAAGGCTCGGGTTGGGGAAAAAAAAGGTGGCTTCACAGAGGAAAATACACAGAGAGCGTTGCTGAATGACACCTTGAGCAGATCCTCAGAAATGGAGAAGAAAGCGAAAAGGTGTTTTGAGGGGGCCCGTGAGGTCAGTCACACGTCCACAACCATCTTTTTGTGTATGTCTAATCCTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1647739 False 2193 lncRNA 0.38 2 32179767 32181982
TU1647740 False 2223 lncRNA 0.38 2 32179767 32182012
TU1647741 False 2194 lncRNA 0.38 2 32179767 32181982
TU1647742 True 2195 lncRNA 0.38 2 32179767 32181982

Neighbor

gene id symbol gene type direction distance location
etaa1 LOC106564845 coding upstream 5056 32170305 ~ 32174711 (+)
LOC110493733 LOC106564847 coding upstream 33625 32108646 ~ 32146142 (+)
LOC110493731 LOC106585927 coding upstream 137000 32018424 ~ 32042767 (+)
LOC110493728 LOC106585894 coding upstream 189331 31976595 ~ 31990436 (+)
LOC110493164 LOC106564854 coding upstream 203551 31973440 ~ 31976221 (+)
aplf aplf coding downstream 70413 32252425 ~ 32268211 (+)
LOC110493739 LOC106564840 coding downstream 99668 32281680 ~ 32312639 (+)
LOC110493741 LOC106564836 coding downstream 148079 32330091 ~ 32340259 (+)
ero1b LOC106586106 coding downstream 170937 32352949 ~ 32378308 (+)
LOC110495166 NA coding downstream 240994 32423006 ~ 32425262 (+)
G1439320 NA non-coding upstream 31656 32147093 ~ 32148111 (+)
G1439288 NA non-coding upstream 116544 32060800 ~ 32063223 (+)
G1439286 NA non-coding upstream 125733 32053796 ~ 32054034 (+)
G1439285 NA non-coding upstream 126668 32052843 ~ 32053099 (+)
G1439284 NA non-coding upstream 127079 32052485 ~ 32052688 (+)
G1439367 NA non-coding downstream 28561 32210573 ~ 32210801 (+)
G1439402 ru2b non-coding downstream 92954 32274966 ~ 32281458 (+)
G1439438 NA non-coding downstream 166941 32348953 ~ 32349315 (+)
G1439440 NA non-coding downstream 169965 32351977 ~ 32352229 (+)
G1439706 NA non-coding downstream 262326 32444338 ~ 32444788 (+)
G1438941 LOC106564856 other upstream 272269 31906522 ~ 31907498 (+)
G1438880 NA other upstream 474603 31702494 ~ 31705164 (+)
G1437911 LOC106564885 other upstream 1246183 30927247 ~ 30933584 (+)
G1437734 NA other upstream 1513760 30665171 ~ 30666007 (+)
rbm34 LOC106564828 other downstream 418224 32562173 ~ 32662021 (+)
G1439962 LOC106564826 other downstream 530848 32712860 ~ 32766707 (+)
G1440066 NA other downstream 615086 32797098 ~ 32797432 (+)
G1440162 NA other downstream 769788 32951800 ~ 32956057 (+)

Expression


Co-expression Network