G1439962 (LOC106564826)


Basic Information

Item Value
gene id G1439962
gene name LOC106564826
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 32712860 ~ 32766707 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1648454
TTGCATTCGAATCATTGGCTGTCCTTAGACATATCCCAAATGAAATGAAAACCCCTACAGTTGTACTCAATATTTCCTTTTTGGCAAGTtttttttttttaaacaagtgcATACAAGTACAGCTAGAAGCAATTCAGTTTGCCAAGTGCTCGTAGAGTCATATTAGTTAGTCACATTCTATGTTTAACAGGGACTGCCACCAGAACtaaaagtacatcgaaaaaaagggggaggaggaaagtAGTCTGTTATGATGAGTACATACCTTTAtcttcaaaaaaaaatatattgaaacacaatgtattgaaaaacaaaaacaaaataaacaaaaaaaataattatacagCCATGTTTACGAAGCATACAACTTCCCTTGTGTCCAATATGTACACGTCCATCAGTTTCTTTTGGATGGTATGCATGGTACGAGGATTTATATTCAGTTGTAATGGTGTACATGttggtttttgtttgtttgttgtggtagtttaaaaaaaaaaaaacgctggtaaaatcaaggatctctctcctTTTTTACTTTCACGTCCCCTGCCAAGATGGTGGCTATTTCACCCTGCATGAAGGCCCATGGTACGTTGGAGCCCACCAGTGGGCATTTCTCCCCGCTGGGGCAGTACACCTCTCCCGTGGCCCCCTGCTGTTTGATACTCTCCCGGGAGCAGGGGAAGCAGAACTTGTGCGAGGGCACTGACGGACACTGGACAAAGTGTGTGTCCTCCAGCCTCTCGTGGCACAGGGTGCAGCACAGTGGCACGCTGCCCGGCACCGACGAGTCTGGAATGCTCTGCGGCGGCGCCCCGTGAGGGTCCATGCCCTGCGAATGGGCCGTGGCCACCACCTCCCTCTGGGTCAGCCGCCGCTGGCCTGCAGAGGACGGGGACAGTGGGCTCCCGCTGTTGCGCCGGCCCGCTGCCGTGGTGGAGTGCACCTGGTTGGCATCCTTGGGCGAGCCAGTGTTGCCAGCATTGTCAGCGGCGAGGATGAGTGCTGCCATGGGCGACTGGCCGTTCTGTGCCGTGGCCGCCTCCGGTGGGGTGGTGCGACTGTGGGGGGAGATGGTGGAGGGTGGAGCGGCAGAGAAGCCTGGCAGGGAGGCCGGGGGCATCTTGAGGACCTCTGAGGGCGACGGCAACCAAGGCTGGCCCTCGCCGCCATTCATCTTGGGGGTGGAGCCCTCGCCGTCGGGCTCGGGGGAGGCTTTCCTCTTCATGCTCCGCG

Function

NR:

description
interferon regulatory factor 2-binding protein 2-B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1648454 True 1239 TUCP 0.52 2 32712860 32766707

Neighbor

gene id symbol gene type direction distance location
rbm34 LOC106564828 coding upstream 51098 32562173 ~ 32662021 (+)
LOC110493748 LOC106564832 coding upstream 152350 32499046 ~ 32560510 (+)
LOC110493746 LOC106564833 coding upstream 234284 32447495 ~ 32478576 (+)
LOC110493168 NA coding upstream 271068 32439735 ~ 32441792 (+)
LOC110495166 NA coding upstream 287598 32423006 ~ 32425262 (+)
strn LOC106564825 coding downstream 79513 32846220 ~ 32933183 (+)
LOC110493756 LOC106564824 coding downstream 208131 32974838 ~ 32984904 (+)
iip2 iip2 coding downstream 219969 32986676 ~ 32988014 (+)
LOC110493759 LOC106564822 coding downstream 269291 33035998 ~ 33037993 (+)
LOC110493760 LOC106564819 coding downstream 303049 33069756 ~ 33076669 (+)
G1439960 NA non-coding upstream 442 32711838 ~ 32712418 (+)
G1439952 NA non-coding upstream 7637 32704956 ~ 32705223 (+)
G1439944 NA non-coding upstream 15068 32697561 ~ 32697792 (+)
G1439936 NA non-coding upstream 20632 32692016 ~ 32692228 (+)
G1439793 NA non-coding upstream 36411 32676198 ~ 32676449 (+)
G1440005 NA non-coding downstream 4714 32771421 ~ 32771697 (+)
G1440006 NA non-coding downstream 5237 32771944 ~ 32772151 (+)
G1440048 NA non-coding downstream 7933 32774640 ~ 32774914 (+)
G1440069 NA non-coding downstream 33444 32800151 ~ 32800350 (+)
G1440071 NA non-coding downstream 34714 32801421 ~ 32801731 (+)
ero1b LOC106586106 other upstream 334552 32352949 ~ 32378308 (+)
LOC110493164 LOC106564854 other upstream 736639 31973440 ~ 31976221 (+)
G1438941 LOC106564856 other upstream 805362 31906522 ~ 31907498 (+)
G1438880 NA other upstream 1007696 31702494 ~ 31705164 (+)
G1440066 NA other downstream 30391 32797098 ~ 32797432 (+)
G1440162 NA other downstream 185093 32951800 ~ 32956057 (+)
G1440890 LOC106564813 other downstream 757492 33524199 ~ 33524534 (+)
G1441315 NA other downstream 1209486 33976193 ~ 33976475 (+)
LOC110493778 LOC106564798 other downstream 1523334 34290017 ~ 34317682 (+)

Expression


Co-expression Network