G1440191 (LOC106564821)


Basic Information

Item Value
gene id G1440191
gene name LOC106564821
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 33011002 ~ 33016863 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1648691
GCCATGTTCCTGACTTGTTCTGGACGCAACTCTCGGATGGGACCGAGGGACGCATCTTTGGCCAGCGAGGTCAGGTCACTGCCAGAGTAGCCTTCTGTCATTCTGGCAAGCTGGGACAGTTCTTTCTGTGTGAGAGGATTCCCGTGCTTCCCTAAAAGGTTCTTGACCAGTTTTAGCCGGGTGTCTTCTGTTGGTAAAGCCACGTACACCCGTTTTGCAAATCGCCTAAGAACAGCCTCGTCCAGCTCCTGAGGCCTGTTGGTGGCTCCCATCACCAACACCCGTTCATCCCCACCAGATTGCACCTAAACACACACCCAAATAAATATTATTGGCAGCTACACAGTTGCctatggaaagtattcagacctcttgacttttccacattttgttacattacagccttattctaaaattgattaaatagttttatccccaataccccataatgacaacaacaacaaaaaatgaaataaaattaaatatcactatcaagtattcagaccatatactcagtactttgttgaagcacctttggcagcgatttcagcATCAAGTCTTcgtgggtatgatgctacaagcttagcacacctgtacttggggagtttctcccattcttctctgcagatcctctcaagctctgtcaggatggatggggagcgtctttgcacagctattttctggtctatccagagatgttcgattgggttcatggctctggctggggcactcaaggacattcagagacttgtcctaaagtcactcctgcgttgtctaggctgtgtgcctagggttattgtcctgttagaaggtgaaccttcgccccaggtcctgagtgctctggagcaggttttcatcaaggatctctttgtactttgctcagttcatctttgcctcgatcctgactagtctcccggtccctgccgctgaaaaacatccccacagcctgatgctgctacccccatgcttcaccgtagggatggtgccatgtttcctccagacattcaggccaaagagttcaatattggtttcatcagactaaagcatcttgttcctcatggtctcagagtctttaggtgccttttggcaaacgccaagcgggctgtcatgtgccttttacagaggagtggcttctgtctggccacactaccacaaaggcctttttggtggagtgctgcagagatggctgtccttctgatagtttctcccatctccccagaggaactCTAGACCTCTCTAGtgacctctctgaccaaggcccttctcccccaatttctcagtttggccggggcggccagctctaggaagagttggccgcccggtggttccaaacttcttccatttaagaatgatggaggccactgtgttcgtggggaccttcaatgctgcagaaatgttttggtacccttccccagagctgtgcctcaacacaatcctgtctcggagcattgacaaacaattcctttgacctcatggcctgcttttttctctgacatgcactaacaactgtgggaccttatatagacagttgtgtgcctttccaaataatgtccaatcaattgaatttaccacaggtggactctaactgactaggtttccccctttccctttatcaagttatagaaacatcaaggatgatcaatgaaaacaggatgcacctaagctcaatttcgagtctcatagcaaagggttcgAATAcctctgtaaataaggtattgtgtgtagattgctgaggaatttgttttatttattctaaaatggtttaaggctgaaacgtaacaaaatgtggaaaaagtcaaggggtctgaatactttccgaagacacgGCATCTCTTGGACAGATTTAATGTGGAAGAGGCCAAATAATTATGCAGGATatg

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1648691 True 1880 lncRNA 0.47 5 33011002 33016863

Neighbor

gene id symbol gene type direction distance location
iip2 iip2 coding upstream 22988 32986676 ~ 32988014 (+)
LOC110493756 LOC106564824 coding upstream 26098 32974838 ~ 32984904 (+)
strn LOC106564825 coding upstream 77819 32846220 ~ 32933183 (+)
rbm34 LOC106564828 coding upstream 349240 32562173 ~ 32662021 (+)
LOC110493748 LOC106564832 coding upstream 450492 32499046 ~ 32560510 (+)
LOC110493759 LOC106564822 coding downstream 19135 33035998 ~ 33037993 (+)
LOC110493760 LOC106564819 coding downstream 52893 33069756 ~ 33076669 (+)
LOC110493762 LOC106564986 coding downstream 227113 33243976 ~ 33245965 (+)
LOC118940095 NA coding downstream 566512 33583355 ~ 33584984 (+)
LOC118940096 NA coding downstream 577413 33593813 ~ 33596307 (+)
G1440168 NA non-coding upstream 42826 32967976 ~ 32968176 (+)
G1440155 NA non-coding upstream 71242 32939343 ~ 32939760 (+)
G1440138 NA non-coding upstream 72240 32900576 ~ 32938762 (+)
G1440105 NA non-coding upstream 173490 32836650 ~ 32837512 (+)
G1440102 NA non-coding upstream 176866 32833820 ~ 32834136 (+)
G1440200 NA non-coding downstream 7892 33024755 ~ 33057441 (+)
G1440223 NA non-coding downstream 52363 33069226 ~ 33069456 (+)
G1440234 NA non-coding downstream 72277 33089140 ~ 33090626 (+)
G1440278 NA non-coding downstream 146010 33162873 ~ 33163131 (+)
G1440531 NA non-coding downstream 155353 33172216 ~ 33172560 (+)
G1440162 NA other upstream 54945 32951800 ~ 32956057 (+)
G1440066 NA other upstream 213570 32797098 ~ 32797432 (+)
G1439962 LOC106564826 other upstream 244295 32712860 ~ 32766707 (+)
ero1b LOC106586106 other upstream 632694 32352949 ~ 32378308 (+)
G1440890 LOC106564813 other downstream 507336 33524199 ~ 33524534 (+)
G1441315 NA other downstream 959330 33976193 ~ 33976475 (+)
LOC110493778 LOC106564798 other downstream 1273178 34290017 ~ 34317682 (+)
LOC110493802 LOC106564779 other downstream 2152035 35120694 ~ 35184540 (+)
G1443221 NA other downstream 2657101 35673964 ~ 35744642 (+)

Expression


Co-expression Network