G1440901 (LOC106564813)


Basic Information

Item Value
gene id G1440901
gene name LOC106564813
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 33535888 ~ 33536196 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1649447
TTTTAAGGAGGTTTGAGAAAACAGAGTTGCAAAAAGGACATGAATAAAGCGATATTGGAAAACCGCGTAAACGGATAAGGTTGAAACCTTACCTGTTCCTCTACCTCACAATGATCAAAGTTTTCATCCTGGTCAAGACACCTCAGCAGCTCTGTCAGCATTCCTCTGTCGTTTTCCTCCAATGtctcagagagatccttgacatCTGGGACGCTCCAGAATTGCACGTTTTCCGTGGTTGCACTGTATTCTGAAAGGCATCCCTCGAGCCGATCCTTGTCTGTCTCATGATTGTCATCCCTCTACAAA

Function

NR:

description
uncharacterized protein LOC109890094

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1649447 True 309 lncRNA 0.45 1 33535888 33536196

Neighbor

gene id symbol gene type direction distance location
LOC110493762 LOC106564986 coding upstream 289923 33243976 ~ 33245965 (+)
LOC110493760 LOC106564819 coding upstream 459219 33069756 ~ 33076669 (+)
LOC110493759 LOC106564822 coding upstream 497895 33035998 ~ 33037993 (+)
iip2 iip2 coding upstream 547874 32986676 ~ 32988014 (+)
LOC110493756 LOC106564824 coding upstream 550984 32974838 ~ 32984904 (+)
LOC118940095 NA coding downstream 47179 33583355 ~ 33584984 (+)
LOC118940096 NA coding downstream 58080 33593813 ~ 33596307 (+)
LOC118940097 NA coding downstream 231039 33767235 ~ 33768659 (+)
LOC110493170 LOC108247247 coding downstream 287454 33823650 ~ 33825084 (+)
LOC110493766 LOC106564809 coding downstream 306142 33842338 ~ 33926454 (+)
G1440892 NA non-coding upstream 10028 33525649 ~ 33525860 (+)
G1440891 NA non-coding upstream 10337 33525157 ~ 33525551 (+)
G1440887 NA non-coding upstream 18508 33516424 ~ 33517380 (+)
G1440789 NA non-coding upstream 146651 33389004 ~ 33389237 (+)
G1440787 NA non-coding upstream 148286 33387276 ~ 33387602 (+)
G1440904 NA non-coding downstream 3238 33539434 ~ 33539718 (+)
G1440966 NA non-coding downstream 93725 33629921 ~ 33640039 (+)
G1440967 NA non-coding downstream 97394 33633590 ~ 33641456 (+)
G1440890 LOC106564813 other upstream 11354 33524199 ~ 33524534 (+)
G1440162 NA other upstream 579831 32951800 ~ 32956057 (+)
G1440066 NA other upstream 738456 32797098 ~ 32797432 (+)
G1439962 LOC106564826 other upstream 769181 32712860 ~ 32766707 (+)
rbm34 LOC106564828 other upstream 925547 32562173 ~ 32662021 (+)
G1441315 NA other downstream 439997 33976193 ~ 33976475 (+)
LOC110493778 LOC106564798 other downstream 753845 34290017 ~ 34317682 (+)
LOC110493802 LOC106564779 other downstream 1632702 35120694 ~ 35184540 (+)
G1443221 NA other downstream 2137768 35673964 ~ 35744642 (+)
G1443251 NA other downstream 2210676 35746872 ~ 35751790 (+)

Expression


Co-expression Network