G1441509


Basic Information

Item Value
gene id G1441509
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 33992263 ~ 33995693 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1650162
TGCATTTGACATAAAAATACAAATCATACAGTGCAAAGATTATAAAAGCTGTCATTGTATAGTgtcttaagtattcacacccctttattttccccacattttgttgtgttacaaagtgggattgaaactGTTTTAATTGTAATTTGACatcattgatctacacaaaatactatgtaatgtcaaagtggaagaatttTTTCAACATTTATAAAAATATGTAAACTAAAAcgctaatatatcttgattaagTCTCAGAACTAAGCACACCTGCATTGtataatatttgcccattattattttttaaagttcTTCAAGCTCAAGTTGATTATAGATCTTTGCTAgtcagctattttcaagtcttgccctaGATCTTtcagcagatttaagtcaaaactgtaatttggccactcagaaacattctgttgtcttggttagcaactccagtgtagatttgggcttgtgatttaggttattgtcctgctaaaaggtgaatttatctcccagtgtctgttggaaagcagactgaacaaggtttcctataggattttgcctgtgcttagctttattCCATACATGTTTTTCCCCAAAATCTCCCTactccttgccgatgacaaacatacccataacatgatgcagccacatttttttgcagtatgaagtgccttgttgcaaacaggatgtatgttttggaatatccTTCTTTTcgctctgtcatttaggttagtattgtggagtaactacaatgttgaagATCCATCCACAGTTCTCacatcacaaccattaaactctgtaactgttttaaatccCTGAGTGGTGTCGTTCCTCTCTGGcaaatgagttaggaaggacgcctgtatgtTTGTAGTGACTAATTCATAACTCCACCATGCTCAGAGGGATATTCAGTgtcatttttttttaacacatcTACCATTAGGTAACCTtatttgcaaggcattggaaaacctccctggtctttgtggttgaatctgtacttGAAATTCAttactcgattgagggaccttaaaaataattgtatgtgtggggtacagacagGGTAATCATTCAAAGGTAATGTTAACCACTAGTGCTGAACACCATGCAACTTATGAGAATTGTTAGCAAAATTTTACTCCTGAAtaaatttaggcttgccataacaaagggattgaacaCTTAAGAAATGTCAGCCTttcattttaaatgtaaaaaaaaaaaaaatccaccatGACATTATGCAGTAGTGTGCGTAGAGCAGGGACCAAATagctcaggctgtaacacaacaaaatgtgtcaaaTGTAAAATGAGTGTGAATACTTtgcgaaggcactgtacattaagtGTAAATGTATATCAAATCTCCATTCATTTACTCTGGGAATATTTTAAGTAGTTTAAAGATGCCTAATGCAGAAAtctctctgccatttcctggttgctaaaattgtaCATTTCTGTGTATGAGACAAAACAAGTATAGTGTacagaatcattgtaccatctaaaccgctgtgaaatatgttttccataaccaaaaatattgtatttttagctggtgtacaaaaccaagaGGCAAAAACAAAACTTTAGAACGGGAAGAAGCATAGAAATAACACACAGAACAGACCTACCACGTCTTAGACTTGCATTCAATGAGAATGAAAGGTCTATAACtcctcacatttctatgtgaatttggtcaggtcgcccaaaaaagTGACATAGCGCAGCTTTAAAAATTGAAGCAATCCACTAAAATTCACACTGCAATTTTGAAATGTATGCTTTGACAACAGCATAGAAATACAAGGTCACAAAAGAGAGGACGGGTGCAATTTTAACATATCAAAAGTATACCATACAAATTATTGGAGAACGCAAACAAATACAACTAATGCACTTATTCTGGGAACATTTCAAggcatatatatatgtatataaaaaataaaaaagaggcAAGCACAGTAAGAGCACATAATTTGGCCATGCTGAACAAATGTTCATAAGTCACTTTAATTAAACTTCCATTCCCCAACCATCATTAACTATAGTTATGAATCTTCAAAAAAGaaaaataattataattgtaaaatgtaactaggcaagtcagttatgaacaaattcttatgtacaatgacggccttaAAGCTTGAGCCTTCCTCAACATTTAAAGTGCCTGGTCACAGTCTCAGCTCCATTTACAACTAACCTCACCAAAAACCAATCTATTCATTTGTGAGATAGTTGTTACTCACCAATAAGCAAATGGATagacaaaaaaaacattacacAAACGTTACGGTTTGGTTGACACCTAGTGGCAACTGAAGGTAACAAATGACAGATCTGTCTATCATTTTGAGGCTGGGGGGATAGTCATTTGAGAACAGTTGTTTACTTTCAGACACCAATACCCAAAATCCCTACACAAGCCTCGAAATCTTGGTAAAGCAGCAGAGTGTGGGTAAAATTCACTAGcaggaagaaaaaaaagacaGTTAAGAGTAAGAGGACACCCACATATCATAGCAAATAACTTTGAATGATAAAGTTGTCAGATTTACCTATGGATAATAATAAAGTTAAACCTGGATGCCTACTCTAGTCAACAGCAAATACAACATTTTAGTAATAGGTTACAGTCCCACAAGACATAACCATTATAGTTTAGAAAAACGTTATAGTATCATTGcgaaaaaatatattaaaacgtttgcactcactactgtaactcgctctggataagagcatctgctaaattacttgaATCTAAAAAGTAAATTAATTTCAGTCCATTTCTAAAACAGCGTGTTTCACACATTGTGTGACACTAGTTTGCAATGATTCGATCACTAATTTGTTACATAAAAagcaagaaaaataaaataaagataaaaCGTGACGGAAATATAAGAGTTAACTCTTGTAATTCCCAGACAGTTTTTCACAGAGATACAATATACTTGTGTTTTAAACACCATATTTGGCTGTGTATATGGTATAAATGCCACTGAAGTTAGTCTTTCCTTGTGCTCCCCTGGAGCATAAACATACAATCTCATTGAATGTTAAAAAAGTATTTTCCATACCTACTATATACCTAATACCATCTTTAAAGTAATCTTGTCATCTTTACAGCTAAAACCAACCCAAGAGCCATTCCTCCCATTTTAATCCATACTCTATCTCCATTACAGGAATcatctgggttgtgttcattatggCACGCAAAAACAAAagtttataaaaaaaacattttgtaccAGAAACTAAAAAGGAGTGCTGCTTATTGGACCAAGTCCAGGTAGTCCTTCCCCGTTTGTCCCTTTT

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1650162 True 3333 lncRNA 0.35 2 33992263 33995693

Neighbor

gene id symbol gene type direction distance location
LOC110493171 NA coding downstream 158299 33825265 ~ 33833964 (-)
catl catl coding downstream 180658 33798978 ~ 33811605 (-)
LOC110493765 LOC106564810 coding downstream 210086 33778695 ~ 33782177 (-)
LOC110495170 NA coding downstream 236492 33754737 ~ 33756106 (-)
LOC118940399 NA coding downstream 329793 33660413 ~ 33662470 (-)
LOC110493773 NA coding upstream 127324 34123017 ~ 34128257 (-)
LOC110493771 LOC106564804 coding upstream 137354 34133047 ~ 34144263 (-)
LOC110493774 LOC106564802 coding upstream 150382 34146075 ~ 34166122 (-)
pex6 LOC106564799 coding upstream 258499 34254192 ~ 34270050 (-)
slc22a7a LOC106564980 coding upstream 335347 34331040 ~ 34344763 (-)
G1441499 NA non-coding downstream 10275 33981781 ~ 33981988 (-)
G1441488 NA non-coding downstream 29042 33960585 ~ 33963221 (-)
G1441477 NA non-coding downstream 40015 33951330 ~ 33952248 (-)
G1441438 NA non-coding downstream 60929 33882508 ~ 33931334 (-)
G1441400 NA non-coding downstream 154626 33835308 ~ 33837637 (-)
G1441669 LOC106585018 non-coding upstream 65020 34060713 ~ 34099159 (-)
G1441758 NA non-coding upstream 243034 34238727 ~ 34239044 (-)
G1441832 NA non-coding upstream 306599 34302292 ~ 34308705 (-)
G1441837 NA non-coding upstream 307168 34302861 ~ 34303469 (-)
G1441845 NA non-coding upstream 322547 34318240 ~ 34319107 (-)
LOC110493763 LOC106564812 other downstream 575910 33413110 ~ 33515866 (-)
G1440786 NA other downstream 605735 33385937 ~ 33386528 (-)
G1440781 NA other downstream 609544 33381901 ~ 33382719 (-)
G1440711 NA other downstream 739884 33238621 ~ 33252379 (-)
G1440683 LOC106606817 other downstream 797988 33189835 ~ 33194275 (-)
G1442139 NA other upstream 364409 34360102 ~ 34361306 (-)
G1442336 LOC106564790 other upstream 724734 34720427 ~ 34720792 (-)
G1442443 NA other upstream 908389 34904082 ~ 34904616 (-)
LOC110493800 LOC106564782 other upstream 1064506 35023723 ~ 35061975 (-)
G1442932 rbbp9 other upstream 1233061 35228754 ~ 35232154 (-)

Expression

G1441509 Expression in all Baseline Samples

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G1441509 Expression in each Bioproject

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G1441509 Expression in each Sample
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Co-expression Network