G1441578


Basic Information

Item Value
gene id G1441578
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 34143637 ~ 34214105 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1650240
GATTGCACTAGTATGCTATCTTTTTGGGGCAATATTCATTTAAATTTAAGCAGGCTGGAAAAAGTAATAATTTAAATATAGTAGGACAAAAGACAAACCAAATAAATGTGCGAGAAGGGACATGGAAATTAAAATGTTTGAAAGACACTTGAATGAAATGCAAGTGCAACGAGAGCCTGAAATAATGGCAAGCCAATAGCCTAGTAAACACTACATACGGTAGGTAACATGCGAATGTCATGTCTTTTTACGGCAAAATGCAAGTCCTCAATGTTCATGATTATACTTACTTCTGGCCACATTATTTCCACGGGAAAAGATTGAGTCAGTGTAAATGAGTGGTTTCATGGTCATTTAGGCTTGCATTTCAACATGTTTTAATAAGCTTGTCACCACGTACAGTAGTGAATTAGCCTATTTCTTCCTCCATTCCTTAGCAGTGATTAGGCAAAAtttgagaaacgttcccaaagttcCGGAAATCATCCAACCAGGATCTCTGGagaacgtacagttgaagtcggaagtttacatacacttaggttggagtcattaaatatcgtttttcaaccactccacaaatgtcttgttaacaaactatacttttggcaagtcggtaaggacatctactttgtacatgacacaagtaatttttccaacaattgtttacagattatttcacttataattcactgtatcacacacaattccagtgggtcagaagtttacatacactaagttgactgtgcctttaaacagcttggaaaattccagaaaattatgtaatggctttagaagcttctgataggttaattgacatcatttgaatgaattggaggtgtacatatggatgtatttcaaggcctaccttcaaactcagtgcccctttgcttgacatcatgtgaaaatcagacaagacttcagaaaaaaattgtagatctccacaagtctggtttatccatgggagcaatttccaaacgcctgaaggtaccacgttcatctgtacaaacaatagtatgcatgtataaacaccatgggaacacgcagccgtaataccactcaggaaggagacgtgttctgtctcctagagatgaacgaacgttggtgcgaaaagtgcaaatcaatcctggaacaacagcaaaggaccttgtgaagatgctggaggaaacaggtacaaagtatctatatccacagtaaaacgagtcctatatcgacataacctgaaaggccgctcagcaaggaagaagccactgctccaaaaccgccataaaaaagccagactacggtttgcaactggacatggggacaaagatcgtacttttgggacaaatgtcctctggtctgatgaaacaaaaatataactgttttgccataatgaccatcgttatgcttggaggaagaaaaggggaaggcttgcaagccacagaacaccatcccaactgtgaagcacgggggtggcagcatcatgttgtgagggtgttttgctgcaggagggactggtgcacttcacaaaatagatggcatcatgaggaggtaaattatgtggatatattgaagcaacatctcaagtcaagttaaagcttggtcacaaatggttcttccaaatgaacaatgaccccaagcatacttacaaagttgtggcaagaacaacaacgtcaaggtattggagaggccatcacaaagccctgacctcaatcctatagatgtgtgttggcagaactgaaaaaagcgtgtgcaagtaaggaggcctacaaacttgactcagtttttccagctctgtcaggaggaatgggccaaaattcacccaacttattgtgggaagcttgtggaaggctgcccgaaacgtttgacccaagtttgaaaaaattaaaggcaatgctaccaaatactaattgagtgtaagtacacttctgacccactgggaatgtgatgaaagaaatacaagctggtATAattcattatctctactattattctgacatttcacattcttaaaataaagttgtgattctaactgacctaagacagggaatttttactaggattaaatgtcaggaattgtgaaaaactgagatgaaatgtatttggctaaggtgtatgtaaacgttcaACCAATGTACAGTTGGTGACCAGGGTGGGATCCTTTCGATACGCCTATGGGGCCTGGGCACACAGATGCTCCTAGAGAGAAGGGGGAATACTGAAGCATGCCACGATGACAGTTCTACGGTCTCCATCAGAGATCCAGGCGTTTGGCATAGATGGTAAAGCATTCATTTTTGGACTGCAACATTGTAAGATTGTTACCTCCACGGCACTTGATGTACATTCATTGGTAGGTTACACTATTTTTAGATACTTCAAATACTGCCTGAGACACCTTTTTCTATTTGTCTCCGTACAATAAATGGTAAAACACTATTTGTAATGGTGGTCTTtgttcatatgtacagtatatgca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1650240 True 2461 lncRNA 0.40 2 34143637 34214105

Neighbor

gene id symbol gene type direction distance location
LOC110493772 LOC106564803 coding upstream 11014 34129926 ~ 34132623 (+)
LOC110493770 LOC106585018 coding upstream 22414 34040261 ~ 34121223 (+)
LOC110493769 LOC106564807 coding upstream 109514 33996168 ~ 34034123 (+)
LOC110493768 hebp1 coding upstream 147921 33983660 ~ 33995716 (+)
LOC110493767 LOC106564808 coding upstream 173537 33937534 ~ 33970100 (+)
LOC110493777 NA coding downstream 27808 34241913 ~ 34254653 (+)
LOC110493778 LOC106564798 coding downstream 75912 34290017 ~ 34317682 (+)
LOC110493783 LOC106564979 coding downstream 216782 34430887 ~ 34443032 (+)
LOC110493785 mal coding downstream 245985 34460090 ~ 34468487 (+)
slc8a1a LOC106564793 coding downstream 296502 34510607 ~ 34560437 (+)
G1441582 LOC106585043 non-coding upstream 2370 34139960 ~ 34141267 (+)
G1441595 NA non-coding upstream 5057 34138126 ~ 34138580 (+)
G1441581 NA non-coding upstream 6842 34136504 ~ 34136795 (+)
G1441580 NA non-coding upstream 15411 34127721 ~ 34128226 (+)
G1441576 NA non-coding upstream 17004 34126320 ~ 34126633 (+)
G1441641 NA non-coding downstream 2803 34216908 ~ 34217213 (+)
G1441652 NA non-coding downstream 14270 34228375 ~ 34228715 (+)
LOC110493775 LOC106564801 non-coding downstream 17342 34173076 ~ 34233684 (+)
G1441614 NA non-coding downstream 21093 34235198 ~ 34237791 (+)
G1441315 NA other upstream 167162 33976193 ~ 33976475 (+)
G1440890 LOC106564813 other upstream 619103 33524199 ~ 33524534 (+)
G1440162 NA other upstream 1187580 32951800 ~ 32956057 (+)
G1440066 NA other upstream 1346205 32797098 ~ 32797432 (+)
G1439962 LOC106564826 other upstream 1376930 32712860 ~ 32766707 (+)
LOC110493802 LOC106564779 other downstream 954793 35120694 ~ 35184540 (+)
G1443221 NA other downstream 1459859 35673964 ~ 35744642 (+)
G1443251 NA other downstream 1532767 35746872 ~ 35751790 (+)
LOC118940407 NA other downstream 2024839 36234292 ~ 36242642 (+)

Expression


Co-expression Network