G1441832


Basic Information

Item Value
gene id G1441832
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 34302292 ~ 34308705 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1650525
gccaacttctgtctgtagcatccgaacagtttgggctacacactaacatGACCCCTCTGTGTAAAGGTGAGACTATCACAAACAAGCAcatgttgttttgctctaggacgcccacaggcctcaaaagactcatctgaaggtccccCTGTACCAGTCAAAATAATTTATGGAAGTATATATAGAGACTGTTTATTGACCAAAAATAGGGCTTAGTCccatgagctaaaataaatattctagaaatgttccatatgtacaaaaaatatataatttctcTCATGGGGAAAAAAGACATGTGATCCGGAGGCCACTTTCCTGCTGGGTAGGCTACACGGGACAGGTGATATTCTGCCCAATCTCTGCATGCCATGGGCTCTCCGACTCTGTTCCTGCTgctacccagtgcttaatttgggaaaccaagtgaaatctgtcgACAACATCGATATTAACATGttatcacaacaaaacatatttaatTTAACTTTTGACACCCCTCTCTGCGCGCTcgagaaaggaatgaaggagagaggggtggagatggaaaCGCACAATGGAAACGCACTTtattctgtagctaaaggtaatgtgtcagcatattaattatgaaaatataaaaaatgcccTGTTACTAGGCTCGTCGCTCGTACAACTCGTCGATCCTTGTCACTAATGGGCTAATGCAGCAGACagccacaccgggttccactcctatcagctaaacaCAAGAAGATCACCAACACTTGACAATTGAGGAGTGTGAAAACATTGCCTGGTTCGACTAATGCCGGTTCCTGttgtgtcatgctgatggcagtcaggatttggatggtgatggtgatgtacTGTTTTCCCCACACCAATTGAGCAACGAACGATTCCGAATTCAGGCTGTTCTTGAGGCAAAAGAGGGTCTGACCCAGTACTAGATGAGTGTACTTAATAACTGTCGAGTGAATGGATTTCCCACATTACCAATTTGTTCATATTTAGACTTTGTAATTATTTTGATGTCGATATTTGTACTGCACTGTTGAGGAGAGAtcacaagtaagcatttcactttatcGTTTACACATGTTGTATCCTGAGCActataaactttgatttgatgtcagAAATACAGACCTTAAACTAAaaatccacccaaaaccactcAAACCATACATAACACTAATATGTGAGAACAATATTTTTTGTGAACATTTTTTCATTATAATAAGGCTGGTAACAACATTTAAAGTtgttgtggaaatctgttgcagctcaagtcgacAACAAAACCCACATTGCaatgctctctctatgggctggctggttagctagttagctcgcTAGTTAACGTAGcaacacacaataataccaaagtcaatatcagcatgtgaagtagctagttagctgtaaaatcgcctaaacaaactgcactatcaatttaggagtcaacaatctcaccatgttcatCCTGCAGATCGGTGTGCCTCAAAGAGTTGAGTCTGTCATTCGCAACTTtaccatgcaatgcaccctgggCTGAAAAGGCAGACAAATAGGAGAAATGTGTTAGACCCTCTGTTAAATTACATATTTCTTGAGGTAGGAATATTACAAAAATACTATCGATGGTTCATTCGAGAGAAGACAACCTCCCACATTATGACATTGGCCAGTATTATAATCTGACATGTATGATGGATGTTTTCGCGATCTAAAAGTCGTATTCCTATTCACTTCTAGTGTAGTGAGAGTGGCTTTATCACAGTGCTACGTCACACCAATTacatttctgcctgcttgaatggcaatagctcagatacacatgaaaacatgatgATGCACAAAGACATTCAATATGTGTGAATCTTTACTTTAAATATAAACTGCTTTCACCTCCGTTTTCCTCCTTCTCATTAAGCAATGCCACTGAAAAGACCAAATTTGTGTCTTAAACTCGTGctttgatgtgggtgtttcttATGTGTTGTCTTGCCAGTAACACAGTTAGTCATTAACCCGTCAAGATAACATGGAAATactctaaccagctctgctagggcgagtaaaatattcagagtgaggtgttctctcatttgtgtctggatgtAGCTatcaagctagccaactttagccagttagcttcaGTGCTTGACTGCTATTGTGAGATCACTCTTCAACCGTGTAAGggttctcgtcctcctcttctgaggagaagtagcgagaaggatcggaggaccaatgcgcagcgtggtaagtgtccataatgttttttaTCAAAGACAATAGAACactcgaacaaaacaacaaacgatgacctgaatatacaaaaccgaaaacagtaccgtgtggaccaaacactcacgaaaaacaaacacccacaacccaaaagtgaaacccagg
>TU1650526
aatttgttcaatgttggcccgtgactttgttcaggttttacattttggcccactgggtatttgagtttgacacccctggtgtaagggttctcgtcctcctcttctgaggagaagTAGCGAGAaagatcggaggaccaatgcgcagcgtggtaagtgtccataatgtttttttATCAAAGACAATAGAACactcgaacaaaacaacaaacgatgaCGTGAAAATacaaaaccgaaaacagtaccgtctcctacctgacttcgccatactccctgtgtgcccccgTCCAATACattttgggggctgcctctcgggcttccagccgcgctgccgtgctgcctcctcataccgcagcctctccgctttcgctgcctccagctctgcctcggggcggcgatattccccagcctgagcccagggtcctttgccgtccaatatctcctcccaagtccagttcTCCAGGTATCGCTGCCTCTcgtcaccacgctgcttggtcctttggtggtgggtgtttctgtaagggttctcgtcctcctcttctgaggagaagtagcgagaaggatcggaggaccaatgcgcagcgtggtaagtgtccataatgttttttaTCAAAGACAATAGAACactcgaacaaaacaacaaacgatgacctgaatatacaaaaccgaaaacagtaccgtgtggaccaaacactcacgaaaaacaaacacccacaacccaaaagtgaaacccagg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1650525 False 2394 lncRNA 0.41 3 34302292 34308705
TU1650526 True 733 lncRNA 0.50 2 34302292 34304087

Neighbor

gene id symbol gene type direction distance location
pex6 LOC106564799 coding downstream 32242 34254192 ~ 34270050 (-)
LOC110493774 LOC106564802 coding downstream 136170 34146075 ~ 34166122 (-)
LOC110493771 LOC106564804 coding downstream 158029 34133047 ~ 34144263 (-)
LOC110493773 NA coding downstream 174035 34123017 ~ 34128257 (-)
LOC110493171 NA coding downstream 468328 33825265 ~ 33833964 (-)
slc22a7a LOC106564980 coding upstream 22335 34331040 ~ 34344763 (-)
ttbk1a LOC106564797 coding upstream 40062 34348767 ~ 34397687 (-)
tpcn3 tpc1 coding upstream 104838 34413543 ~ 34430556 (-)
pgap4 tmem246 coding upstream 137651 34446356 ~ 34468485 (-)
LOC118940658 NA coding upstream 187915 34496620 ~ 34496669 (-)
G1441758 NA non-coding downstream 63248 34238727 ~ 34239044 (-)
G1441669 LOC106585018 non-coding downstream 203133 34060713 ~ 34099159 (-)
G1441509 NA non-coding downstream 306599 33992263 ~ 33995693 (-)
G1441499 NA non-coding downstream 320304 33981781 ~ 33981988 (-)
G1441488 NA non-coding downstream 339071 33960585 ~ 33963221 (-)
G1441845 NA non-coding upstream 9535 34318240 ~ 34319107 (-)
G1442136 NA non-coding upstream 47341 34356046 ~ 34356269 (-)
G1442151 NA non-coding upstream 58673 34367378 ~ 34367606 (-)
G1442172 NA non-coding upstream 116249 34424954 ~ 34425944 (-)
LOC110493763 LOC106564812 other downstream 885939 33413110 ~ 33515866 (-)
G1440786 NA other downstream 915764 33385937 ~ 33386528 (-)
G1440781 NA other downstream 919573 33381901 ~ 33382719 (-)
G1440711 NA other downstream 1049913 33238621 ~ 33252379 (-)
G1440683 LOC106606817 other downstream 1108017 33189835 ~ 33194275 (-)
G1442139 NA other upstream 51397 34360102 ~ 34361306 (-)
G1442336 LOC106564790 other upstream 411722 34720427 ~ 34720792 (-)
G1442443 NA other upstream 595377 34904082 ~ 34904616 (-)
LOC110493800 LOC106564782 other upstream 751494 35023723 ~ 35061975 (-)
G1442932 rbbp9 other upstream 920049 35228754 ~ 35232154 (-)

Expression

G1441832 Expression in all Baseline Samples

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G1441832 Expression in each Bioproject

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G1441832 Expression in each Sample
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Co-expression Network