G1442172


Basic Information

Item Value
gene id G1442172
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 34424954 ~ 34425944 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1650907
TTTTGTAATatttcaaaacatttatttgaaaattCAAAGTTCATCAATATTAATGACAACACTAACAGTTGTGAATTTAGAAAACATTGAACACTAAAAGGAACAAAGTTTGCGTGTGTGATGCTTTCTTATGCTGTCTTAGTCCATGCATTTGTTACAAACAACAAGCATGTGACTATGCTCTTTGCAGACAGGTGTGTTGCACTGAGAACACCAGCAGCTGACTTTTCTATCCTTTGCGCTTGGGCAGAGCTGGCACCTCTTCTGGACCTGGCTGCTCTGAGTGGTGGTGGCATGGCTCTCTTTCATCACCCCACAGCTTTCCATTGCCTCAgatcatctgtggagatgggagaaccttccagaaggacaaccatctctgcagcattccaccaatcaggcattttatggtagtggccagacggaagccactcctcagtaaaaggcacatgacagcccgcttggagtttgccaaattggcacctaaacaagattctctggtctgatgaaaccaatattggaCGGAATGCCAAGCGTCGCGTCTGGAGGAAAACTGCTCATCCACTGTGACGCAATTGCTGGGGATGAACCTTCCTCTACAGTTTGCTAGGAAAAGGTCCCCACATACCGGAAGGCTGCCAGGTGGTCCGTTGCCTCTCTGACCACTCTGGTCCTCTTGTCATCAAGCCTCCGGTAGCGACGGATATCCTCATATCTTCCGACCGACATGGTGGCCTTATACAAAAATAGCTCCTTTGTTGAGACATCCCACCTGTTCTCCATGCCGGAAAGGAGGGTTAAACCAATAAAGGCCTTTAGTTCTTCTTTGTCGACTTCTCTCCACTCTGTCCCTTTTGCTGTCGCTCTTCTCCGTCCTTCTAAATTTGTACACTTTAGGACCTCCAATGATGTTGTCACTAATAAACAACTCCCAGGCATACTTTGGTGACACAACTGTTGACCCCGGCAC

Function

NR:

description
PREDICTED: uncharacterized protein LOC107588624 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1650907 True 970 lncRNA 0.46 2 34424954 34425944
Loading

Neighbor

gene id symbol gene type direction distance location
ttbk1a LOC106564797 coding downstream 27267 34348767 ~ 34397687 (-)
slc22a7a LOC106564980 coding downstream 80191 34331040 ~ 34344763 (-)
pex6 LOC106564799 coding downstream 154904 34254192 ~ 34270050 (-)
LOC110493774 LOC106564802 coding downstream 258832 34146075 ~ 34166122 (-)
LOC110493771 LOC106564804 coding downstream 280691 34133047 ~ 34144263 (-)
pgap4 tmem246 coding upstream 20412 34446356 ~ 34468485 (-)
LOC118940658 NA coding upstream 70676 34496620 ~ 34496669 (-)
tmem178 LOC106564792 coding upstream 164905 34589353 ~ 34605070 (-)
gemin6 gemin6 coding upstream 359593 34785537 ~ 34788361 (-)
LOC118940117 NA coding upstream 388409 34814353 ~ 34815153 (-)
G1442151 NA non-coding downstream 57348 34367378 ~ 34367606 (-)
G1442136 NA non-coding downstream 68685 34356046 ~ 34356269 (-)
G1441845 NA non-coding downstream 105847 34318240 ~ 34319107 (-)
G1441832 NA non-coding downstream 116249 34302292 ~ 34308705 (-)
G1442188 NA non-coding upstream 34650 34460594 ~ 34465401 (-)
G1442194 LOC106564793 non-coding upstream 45837 34471781 ~ 34560447 (-)
G1442241 NA non-coding upstream 136627 34562571 ~ 34562802 (-)
G1442243 NA non-coding upstream 138320 34564264 ~ 34564704 (-)
G1442139 NA other downstream 63648 34360102 ~ 34361306 (-)
LOC110493763 LOC106564812 other downstream 1008601 33413110 ~ 33515866 (-)
G1440786 NA other downstream 1038426 33385937 ~ 33386528 (-)
G1440781 NA other downstream 1042235 33381901 ~ 33382719 (-)
G1440711 NA other downstream 1172575 33238621 ~ 33252379 (-)
G1442336 LOC106564790 other upstream 294483 34720427 ~ 34720792 (-)
G1442443 NA other upstream 478138 34904082 ~ 34904616 (-)
LOC110493800 LOC106564782 other upstream 634255 35023723 ~ 35061975 (-)
G1442932 rbbp9 other upstream 802810 35228754 ~ 35232154 (-)
LOC110495171 cssa12h2orf73 other upstream 1189760 35615229 ~ 35617995 (-)

Expression

G1442172 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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G1442172 Expression in each Bioproject

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G1442172 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network