G1442194 (LOC106564793)


Basic Information

Item Value
gene id G1442194
gene name LOC106564793
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 34471781 ~ 34560447 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1650934
TTCCCTGAATAAAGCTAGGTTTCAAAACGTTTATTTTCTGCGACAGAACTAATTCAGCCTTGGTACACATTACAGATTGTGTACGTCCCTCCTGTTTTGCGTGCACAATGAAAGAAAAATCATGAcattcaaatacattttaacagcaaacaaatacatttaaaacaaaaaccctgataaataaaataaaacactcaATGAAACCCAGAACAAGCATTCTGAGAGAAATATGGTGCTCGTATTACCTAGCCTGGTGGTCCAGTCTGTTTACGCTTTTGCCAACTCCTCTCTGTGTTCGTTCCTTgtcatacactacatgacaaaatgtatgtggacacctgctcgtcgaacatctcattccaaaatcatgggcattaaaatagagttggttccccctttgctgctataacacccTCCATTCTGctgggaaggctttacactagatgttggaacattgctgcggggacttgcttccattcagccacaagagcattagtgaggttgggcactgatgttgggtgattaggcctggcttgcag
>TU1650933
TTCCCTGAATAAAGCTAGGTTTCAAAACGTTTATTTTCTGCGACAGAACTAATTCAGCCTTGGTACACATTACAGATTGTGTACGTCCCTCCTGTTTTGCGTGCACAATGAAAGAAAAATCATGAcattcaaatacattttaacagcaaacaaatacatttaaaacaaaaaccctgataaataaaataaaacactcaATGAAACCCAGAACAAGCATTCTGAGAGAAATATGGTGCTCGTATTACCTAGCCTGGTGGTCCAGTCTGTTTACGCTTTTGCCAACTCCTCTCTGTGTTCGTTCCTTgtcatacactacatgacaaaatgtatgtggacacctgctcgtcgaacatctcattccaaaatcatgggcattaaaatagagttggttccccctttgctgctataacacccTCCATTCTGctgggaaggctttacactagatgttggaacattgctgcggggacttgcttccattcagccacaagagcattagtgaggttgggcgctGATgatgggcaattaggcctggctcgcagtcggcgtttcaattcatcccaaaggttcgatgtggttgaggtcagggctctgtgcatgccagtcaagttcttccacaccgatctcgacaaaccatttctaaatggacctcgctttgtgcacgggggcattgtcatgtgaAACAGGAAAGTTTattccccaaattgttgccacaaagtgggaagcacagaattgtctagaatgtcattgtatgctgtagcgttaacatttcccttcactggaactaaggggcctagcccgaatcatgaaaacagccctagaccattattcctcatccaccaaactttacagttggcactatgcattggggcagatagtgttctcctggcatctgccaaacccagattcatccgtcagactgccagatggtgaagggtgattcatcactccaaagaacgtatttccactgctccagagtccaatggcgatgagctttacaccactccagccgacgcttgacaATGCAcgtggtgatcttaagcttgtgtgcgactgctcggccatggaaaccaatttcatgaagatCCTGACGCTgcctccagaggcagtttggaaatcggtagtgagtgttgcaaccgaggacaaacgATTTTTACACGTtgcgcacttcagcactcggcggtcccgttctgtgagcttgtgtggcctaccacttcacggctgagccgttgttgcacctacatgtttccacttcacaataacagcacgtaCAATTGAGCGGGGTAGCGCTTGCAGGGCAAAAATTTGATTAACTAACTTGCTGTAAAGtcggcatcctatgacggtgccatgttgaaagtcaatgagctcttcagtaaggccattctactgccaatgtttgtctatggccaaatccactaatttgaaggggtttccatatgtatatatagtgtatgtgtagCTTGACAAGGATAGAATAGAAAGTTGGCTACAGCACAGTTACAGAAGGGGACCAGGCTATACAGTATACATGACCAATGTTAATACATAAAACAACGAGTCTAGAGGTGGGCCTAGGCTTGTGACAAGCTGAGGAAGATTGAATCAATCAAATATTGTCAATGTGTGTGACATCACTAATAGGAACAATgagaaaggtgaaataaacagaTGCCATAATATGGCTATTTTTTACGCATCAGCTGTCCTAATAGTGAATCAATGTGCTTaatgtgagagaaaaaaattgGTCTCAAttccttttgttttgtttaaaccAGTCAAAACTGTGCAAGAAGTTACAATAACATGCATTCACACAATACTGATAAAGTGATACTTCTTTTTTTAGGTTTGGCTGAATTCACTCTGTAGTAGGTAGGGAGTATCCGTTTTGGCCCCTGAATGACGACAAGACAACTTCCATTGCAAGAAAGGATATAAATGCCTCTTCAAGGACCTTGAGAACCACCCAGACTCATTGGGAACTATAGAGGAAAAGAGGGGTGAAAGTCCATTCAAACGCAGCTCCCCTGGAAGGTAACATTAGCTATTCTTGTGTCCCCAAAGGGTAGGAAAATAAATAGCTTGAATCTTATATTTTCAACATTGAGGCCAACTACCTCACTTTGACAACACTGTACACTATATACAAAAACAGATAACACAGACAAAGTACTGCTTCGTCTTTTCCTCAaacttgacatcagcaaactcaAGCAGAGCAATGTCGTTTTGGACAGTACGAATAACTATCATCAACACAAGAGTATGAGATATTGCCTTTCATACAAATAAGAAAATGATTTGTTCACATTACTTTAAAGAGTGTAGTCTTTCAGATGACATTGTTCCAGGagcaaacacacaaaaacaaacttaATGAACCCAAATCCATTACTACTCATTATCAAAATGTGTCCCCTAATGTTAATGATAACTACGGCTTATTATATACAGTTATGTTTACACTCATGCATATAGTTTACAAGTAGCACATTGATAATCCAACATTGAGGATTATTTAGACATAGACAACACGAGGTATAGACAACACTGGCACACTATGCTCACCACGGCGCTAAAGTGAACATCGCCGCACACCTGGACAAGGAATCAACAACAATGTATGACTAAACTTGACACACAAGAAATTCTTGATGACTTTTCTATGAAAGAAGCACAACTGTAGAGTTTTTGTTGTTTTCTCTGTCACCTGCAGTAGTTAACAGACAAAATGAAAGATGCTAGGGACATCAAATATATAAAGGGATTGGCAGTCTCTGTCTTGGAGATCTTGATAGCTTACTACAGGGATGAGCAATGGACCTCATCATGAGGGACTGCAGTGGCTCGTGGGTCTGCGTAGCCACATCAATACCACCCCCCAGCGAACAAAACATTTTAGCGAACCCCTCGTGACAGCGAAGAGAAACATTTcctgcaattctacacattttgccatggggtgtagagaaatcttgccgttttaaagcaagtttgctgcaattctacacattttgcaacaGGGCGGagagaatatttttttattttacaactAATTTAATGCAGTTCTactaattttgccatggggcggagagaaatatttgcagttttacagctaatttcatgcaattctaccaattttgccatagggtggaggctgaagcacaaccaaatttcgaaattgcaccttgtgtattctattattctaactctcaactgTAAATTGAGACTCCAACGAAGCTCCTaagaatttatttatttatttttctatatTGGTCCGCAGGCCTATTCAAGGAAGTTGCCCATCCAAGGCATATTATACATTTTCTGGACTTTATCGTCTTACTACGATGGAAGTCCTATTCACCCAAATATGAAGGATACAGTATGGATCTTCGTCTTAGGATATAATTCTTGTCATAAGAGGTCTGATAAGAATATCAAAAGAGCTTCAACTCAACCAACCACGCTAGAAAAGGTTGATTCACTTCCctaaaaacattttcaaaaagcTGTCACTGAAAGATATCTAGGCTCATTCCTTCCAATTATATATTTTCTGTTGAGAAAACTTGATTTTAATTTACACTGTTTAGTTTTTGTTTTACAATGATATTTCATTTGTAAATTGTGTTAAATGTATTTTAGTGAAAATTCAGATCCCCTTTTGACAAAACATCTCTGTGTATTATTCTGTGATATTCTCATCTTTTACACTGTCTCCACTGTATAACGTTCTCACAATCTCTTCATTGTAAAAATGGTCTGTTAGCAGACAAAGCCGACCGAATGAAATATGTTTAACACAATTAAAAGAAAGATCATAGAAGACATTATAGGATATACAGTAAATACACTTCACAAAGCCATAGTGCTTATTTCACCTCTAATTCATTATTTATTGACTTGTCTAGTGTAATAGTATTGTCGCTGATAAATGTTTCATGGGgaatttcaaaaaatatataacatgTGCATTAGTGACATTTTATATCAAGACATTCTTCTAGTAAGGAAAGGTTTCTTTAGTGTCTGTGGTATTGGAGATGCAGTCATGACTGCAACAGTACTGTGTAGACATAACAGGAGTTATAGTCACATTTAGGTATTTACCTCAGTAACTATGTATTTATCATCCATATGCCCTTCGCATTTAAACAACCACTCACGTTTCTGTGTTACAGGAATATTATGACATATTTGTCTAgtgtatttttttggggggggggggcactgaatAGAAATTGTGGACGCCAGCCAGCAGCGCTTTTAGGCATAGCTTTGAAGTTCTGTATAACCAAACAAGCACAAGTTTTTTGCTTCATCTGAAATGACATTTTTTTGGATACACAGCCTTAGGAGTCTTGATCCAATGAAAGTCAACAGAGAGCTTCCATTGAAAATAAAGCTGCAACAACAGGATTGAAGGAGCTAGAGAACAAACACTAAATTAAtagttaaaaaaacaaaaacagaatccCTCCGTTTTCACGTTTGAATTTTTTGGGGCCACCATCCTGCTGGTGTTGGTTTAGAGGCCTTAGTTGTAGTAGTGGATTCTTCACATGTCTTGGATGTGGCAGTAGATGGCTAAAGCATTGGATGTCACGGATGTTAGATTTAGGACAACGGGACGTGGTAGTCAATGGCGTAGGAGATGTGACACGTCAATGCCTTCAAAAACCTTGGATTTAATCGTACATAGTTCAGAGGTCTTGGATGAAAGCGATaaattcttcttttttttttagctttcaAAGACTAAAAATCTTTCAATTTCATTTTagaatctttcaaatacttttgaaTAGCTTTATAAAGACCTTATAGAAGCTTTGAAAGACTAAGAAGCTTCCGAAGATCTTTCTGAAGCTTTTGAAGACTCTAGAAGCTAAAGCTTTCAAAAATCTTTTAAATATTGCTTTTTGAATCTTGCTTTCAGATCCTTTATAGCGAAGTTAGAAGCCCTTGATGTGGCAATAAGCTTCCAGGGAGGAGAATATGATGTACATGAGCCACAGGCTGAAGAAGAGACAGGTGGTCGCGATTTTGGGGCCCCGGGGCCCACCCAGCTCGCCCCCAATCTCAGGCCGGCGCCGGTACATCAGCACGGCCACGGCGACAAAGGCGAAGATGGTGAATAGGGTGACGGAGAAGGCCAGGGTGCCCGGATCCACCCGGAAGTCGTTTCCCTTGGAATTGTGGTAGATGGCGGCGATGGACCAGGCCACGCCGATCCCCAAGAAGACGTTGACGGCATTGCTGCCCGTTACGTTGCCGATGGAGGCGTCGGCGTACTGGTCCTGGATTGCAGCTACCTTGCTGGCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1650934 False 539 lncRNA 0.42 2 34471781 34560447
TU1650933 True 5331 lncRNA 0.41 2 34555096 34560447
Loading

Neighbor

gene id symbol gene type direction distance location
pgap4 tmem246 coding downstream 20948 34446356 ~ 34468485 (-)
tpcn3 tpc1 coding downstream 41225 34413543 ~ 34430556 (-)
ttbk1a LOC106564797 coding downstream 74094 34348767 ~ 34397687 (-)
slc22a7a LOC106564980 coding downstream 127018 34331040 ~ 34344763 (-)
pex6 LOC106564799 coding downstream 201731 34254192 ~ 34270050 (-)
tmem178 LOC106564792 coding upstream 30402 34589353 ~ 34605070 (-)
gemin6 gemin6 coding upstream 225090 34785537 ~ 34788361 (-)
LOC118940117 NA coding upstream 253906 34814353 ~ 34815153 (-)
LOC110493798 if4a3 coding upstream 402317 34962764 ~ 34970771 (-)
LOC118940673 NA coding upstream 404819 34965266 ~ 34965392 (-)
G1442188 NA non-coding downstream 6380 34460594 ~ 34465401 (-)
G1442172 NA non-coding downstream 45837 34424954 ~ 34425944 (-)
G1442151 NA non-coding downstream 104175 34367378 ~ 34367606 (-)
G1442241 NA non-coding upstream 2124 34562571 ~ 34562802 (-)
G1442243 NA non-coding upstream 3817 34564264 ~ 34564704 (-)
G1442260 NA non-coding upstream 47171 34607618 ~ 34607860 (-)
G1442283 NA non-coding upstream 83377 34643824 ~ 34714014 (-)
G1442139 NA other downstream 110475 34360102 ~ 34361306 (-)
LOC110493763 LOC106564812 other downstream 1055428 33413110 ~ 33515866 (-)
G1440786 NA other downstream 1085253 33385937 ~ 33386528 (-)
G1440781 NA other downstream 1089062 33381901 ~ 33382719 (-)
G1440711 NA other downstream 1219402 33238621 ~ 33252379 (-)
G1442336 LOC106564790 other upstream 159980 34720427 ~ 34720792 (-)
G1442443 NA other upstream 343635 34904082 ~ 34904616 (-)
LOC110493800 LOC106564782 other upstream 499752 35023723 ~ 35061975 (-)
G1442932 rbbp9 other upstream 668307 35228754 ~ 35232154 (-)
LOC110495171 cssa12h2orf73 other upstream 1055257 35615229 ~ 35617995 (-)

Expression

G1442194(LOC106564793) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
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G1442194(LOC106564793) Expression in each Bioproject

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G1442194(LOC106564793) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network