G1443251


Basic Information

Item Value
gene id G1443251
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 35746872 ~ 35751790 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1652130
CTGTATAGGCTTCCTGCATTTCATTTAGGtaagtgttgtggagtaactacgatgttgttgatccatcctcagttttctcctatcacaaccattaaactctgttttaaaataaccattggcctcatggtgaaatccctgagcagtttccttcctctccagcaactgagttaggaaggatgcctttttatttgtagtgactgggtgtattgatacaccatccaaagcctaattaataactggaggcctagtgcgtggagccggtacaggtagcaccggactggtgacacgcactttagggcgagtgcggggagcaggcacaggacgtaccggactggggaggcgcactggaggcctgatgcgtgaagccggcacaggtggcaccggactgatgACCCAATCTTCAGCCCGCCTGCGCTGCAGCCTACTCTTCGCCAACATCATTCTCCGATATCCCTCTTCACACTGCTCCATCGATTCCCAGGCGGGCTCTGGCTCTCTCCTTGGGTTGACCGACCACCTCTCTATCATCTGCTCCATGTACTCTGGCTCCTCCCGCGGCTCAGACGGCCACCCCCTGTGCCCCTCCGCCAAAAAACTTGGGGTTGTCCTTGGGCTTTCTGCAAACCCTGGCGTTGTCGCTGTCCTCCATTATTACTTTCCGTCTGCCTCCAAGGAAGGGTTTCGTATCCACCCATCACTTCTTCCCATGTCCAAAACTCCTTTACCTCGTAGATACGCTGCTTGGTCCTCAtttggtgggatattctgtcacggttgtcgtaagaacgggaccaaggcgcagcgtacgtagagttccacatctttattataaagtgaaacttaagcaaaacaaaaacaaatgaacGAACAACGAAACgcgactacgtggtgcacatgcacaaacacaaaataatatcccaacaaacacaggtgggaaaaatagctacttaaatatgatccccaattagaggcgaTGATTACCAGCTGGCTCTAATTGGGAACCAaaccaaaacaccaacatagaaattttaaactagaacaccccctcatcacgccctgacctactacaccatagagaaacaaggaggtggtcagggcgtgacaggtagtcgttcaaaaatcatgttaaccactattactGATCACAGAatgagttcatgcaacttattatgtgatttcattttttctcctgaacttatttaggcttgccataaccgaagggttgaatagttattgactcaagacattccagcttttcattttttataaatttcaaaacatttctacaaacaaaattccactttgacattgtcgTATTGTGTGTAGAGATCAGTGTTACAAAATCAAaatgttcaaaactgttaaatcACCAGGAAATCTGCTCTAagtgattttattttaggaaatCTATATATGTTgagtcaatttgcagtgtacaaattatttatAATTCTGTACCGGTAATGACACGTGCAATTAAATAATATGTATGAGTATAGCGCTAGAGCGATATTCGATacagaatatattttataattgcgCTTTAATTCCAATTGAATTCTTGAATTTTAATAAGGCTATATGTAGAATATGAATTGGAATGAAAGGAAACTGAATTGATTGAAATTAAaatgtcttatttatttattctatACAAgtatttgtgatacagtgagctacaaaagtgttgggacagtgacacatttcgTTTTTTGGGcactgtactccagcactttggatttgaaattatacaatgactatgaggttataGTGCAGActatcagctttaatttgagggtattttaatTCATATCGGGTGAAGCGTTGataaattacagcactttttgtacacagTCAATAGAAAGGTCAATAATGTATTGTCTctttttggagtcacttttattgtaaataagaataaaatatgtATCTAAACACTCCTACATTAATGTGactgctaccatgattacggatagtcctgaatgaattgtgaatgacgagtgagaaagttagacgcacaaatatcagaCCCTCAAGACATGTTAACCTCTcatcattacaataacaggggaggttagatttttggggggtgggggggtaggaTACATGTGCGTCTGTATTTtatattaatgtggatgctatcaTGATTACAGATAGctctgaatgaatcgtgaataatgaatAGTCATGATTAAGGATAGTCCTTAATGAATAGGGAATACTGAGTGAGAAAAtgacagacgcacaaatatcataccccccaaaaatgctaacctccttattgtaatggtgagaggttagcatgtctttattttttgcatctgtaactttcactcatcattattccctatccttaatcatggtagcatccacattaatgtagaagagTTTAggaacatattatattcttatttacaataaaagtgactcaaatgacacaatacatgatttaccattaatttctattgggcacaaaatcatctgaaacacaaccaaaacatacagaaaatgcatccaacaagtttgtggagtcataagcttgatgtaatcattgcgtgctaggaatatgggaccgatactaaacttttgactactttaatacacatacagtGTAAGTGAATtggtcccaatacttttggtcccctacaAGTGATGTATTTTCTTaacagttcacccgatatggatgaaaataccctcatattaaagctgacagtctgcacttcaacCTCAtaagtcattgtatcatttcaaaaaACAAATTGGCACAGTCccaatactgttggagctcactgtatatcaTGAATATAGTTACAACCTAACATCTAAAAAAACGAAacataaaataaacatatttaagTGATAATCAAGTTATTATTTTAAATGCTATATTCAATATTTTGCAGTGATATGGCTAGTCGCAGATGCTTTTAGTAATATGAATGAGACTTTTCATGTCTCAATTCAAATTTCAATTCTGAGTTGAAATTAATTACATGTACGGGCAAAACAAAATCCATGTTGTAAGAATGTTTCAGAGGAACTACATgttccctcattagatggttctTTGGATGCCATCTACCATTGTGCCTTTCGGTTTGTTACAGGTGACAGTTGTGATACTCATCACTGCAGACTGTATCAATAGGTTGGCTGGACTTCGCTAAAGATCCGTAGATCTCTACATTACTCCGTTTTCGTTTACAAGGCCCCATTTCATAAACTTCTAACTTATCTAACTTTTCTGTTGAAGTGTAGACACATGAGTTGCCTAACTTGTTCACAGGATTGGTTAAATCTTGAGGTTCCTAGGGTCTCCACCAAGCTAGGTAAATCTGATTTTTACATTTAAAGCACTGTGCTGCCTGGACAAAATTCAAAATACATTTCGTCTTAATATTCTGGTGCTTTTCGGGGCAGTTTAGAGTATTGACCGGGGACTTAATTGTGTAGGAATGTAACTGTTTTTCTGCGTGATTTGTGATGTTTTACTTGTGCTTCCCATAAtgtgtatatttttgttgttgtattgcgCAGGGCACATTTGAACAAGAGACCTAGGTCTCAATATGTCTTatggtaaaatataaaatattttttcaatctgattgaccccaaccctggtgtaGAGTGATCCATAGGCTATTGTAGACAAGAGCCCTATAAAGTATTTTGTCCAAGTCTCATTCAATAaaagcaacagtaaaataacacaTTGAGAAATCTTAGCCGTAAAGTCCAATGCAATTGAGTTGTATGTCTTCATCTGTCCCTGTAGTAGATTATTATCTCTGGAATCTTAATTGAGGCCCAGGCAGACCCACTGAAAAACATGAAAACAAACACAAATCGTTCAGAATTGATTG

Function

NR:

description
protein shisa-9A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1652130 True 3863 TUCP 0.39 2 35746872 35751790

Neighbor

gene id symbol gene type direction distance location
aars2 aars2 coding upstream 5277 35716802 ~ 35741595 (+)
cfap58 cfap58 coding upstream 38355 35689794 ~ 35708517 (+)
bdh2 bdh2 coding upstream 69608 35655475 ~ 35677264 (+)
LOC110493172 NA coding upstream 354517 35368886 ~ 35392355 (+)
rrbp1b rrbp1 coding upstream 435056 35279996 ~ 35311816 (+)
LOC100135837 LOC100135837 coding downstream 24706 35776496 ~ 35793723 (+)
LOC110493821 LOC106565008 coding downstream 42555 35794345 ~ 35824095 (+)
LOC110493822 sde2 coding downstream 73743 35825533 ~ 35847460 (+)
LOC110493823 sde2 coding downstream 86369 35838159 ~ 35847457 (+)
LOC110493827 tmem63b coding downstream 103320 35855110 ~ 35955647 (+)
G1443197 NA non-coding upstream 107428 35638494 ~ 35639444 (+)
G1443198 NA non-coding upstream 110141 35633485 ~ 35636731 (+)
G1443187 NA non-coding upstream 124417 35622015 ~ 35622455 (+)
G1443183 cssa12h2orf73 non-coding upstream 130720 35615413 ~ 35616152 (+)
G1443097 LOC106565001 non-coding upstream 226590 35517766 ~ 35520282 (+)
G1443247 NA non-coding downstream 205776 35957566 ~ 35957888 (+)
G1443346 NA non-coding downstream 206465 35958255 ~ 35958545 (+)
G1443347 NA non-coding downstream 206819 35958609 ~ 35958813 (+)
G1443349 NA non-coding downstream 210421 35962211 ~ 35962441 (+)
G1443352 NA non-coding downstream 217800 35969590 ~ 35969957 (+)
G1443221 NA other upstream 2230 35673964 ~ 35744642 (+)
LOC110493802 LOC106564779 other upstream 562332 35120694 ~ 35184540 (+)
LOC110493778 LOC106564798 other upstream 1444263 34290017 ~ 34317682 (+)
G1441315 NA other upstream 1770397 33976193 ~ 33976475 (+)
G1440890 LOC106564813 other upstream 2222338 33524199 ~ 33524534 (+)
LOC118940407 NA other downstream 487154 36234292 ~ 36242642 (+)
G1443844 NA other downstream 579445 36331235 ~ 36375374 (+)
LOC110493174 LOC106582647 other downstream 740587 36492282 ~ 36557771 (+)
G1444198 LOC106565031 other downstream 1105776 36857566 ~ 36861009 (+)
G1444933 NA other downstream 1650407 37402197 ~ 37402492 (+)

Expression


Co-expression Network