G1443358


Basic Information

Item Value
gene id G1443358
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 35980006 ~ 36019231 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1652238
CTTCACATATTAAAAACCTGGAAAAATACACATGGTTCCATTTTTAACTTACaaagtacattttttaaatgaataaatGATTGCAAAATATAATCTTTGAGTTTCATTTAAGTTACCTTTATCTGCCAATAGTGTTGAAGTGAAGATTACATATCCATCTGTccaaatatttacaaaaacaaTACTACTTTCCAGGGGATGTACTTACTTTTTCACATGACTGTCTGTACATTAGGACATAACATTTAAGTGATACCCTGCTAGGTATAGATTCAAGATATTGTTCCTCATCTCCTGCTACTGTAAAGTAGGCTTTTAAAGGCTGCTAATCATACTGTCATAATTTAAAGTAAAACCATACTGTTTTTGTGACACCTTATTAAGACATTAACAATACACTACCGTaagcaacatttttttaaaatcatgGCGATATGGCAGTTTGCAACGACAGTCATTGTAACAAAGCTCTTTGTGTAATTTCTTAACAAAAATGGAGGCTGTCAAAATGACCATGGCCTGGAGCTGATTTGGCTTTGTCCATGTTTTTGTCAGCTCTTTAGGGCACATGACTAAAGATAGACTCAGTGAGATGACGttgcatgcccaaagtaaacacTATATCAGGTACATTTACACAACAACTAAGAGTGTTGATGGACAAGGCTAAAATGATTTTGTTTTGACCCCGCAGCTGTTTTGGTCCCATTGTGGCAGAGCGATGTGCCCCCATGCACATGCGCAGATACCAGAGAAggctgtgagaggagctataGTAGGACGGGATGAAACGGTATCCAACCACATGTTTAACTCCcatctattccattccagccattacaatgagcccgtcctcttaTAGGTCCTCCCACTGGCAGATTCatgctcatctcaatatctgccgTGCTGCTTGTTGCAATGTTATCTCGCTGAGTCGATCTCACTGCACATCACTTTCTTGTAGGGATTGTGTTATTCATGATTACACTGTATATTGCACTCATACTGATTAAGTATATTTGCCAATAAATGGCAGTTAATATAGCCATAAATTGTGTTTGCTTCGTATTGAGCTAATTCTTTAAAAtgtcacatttatttaactaggcaagtcagttaagaacaaattcttattttcaatgagggcctaggaacagtgagttaactgccttgttcaggggcagaattacagatttttaccttgccagctcggcaTTTCAATCTTGCAacgtttcggttactagtccaatgctctaaccactaggctccctgccaccCCATGTCTTCTTAAGGATTCATGGCTTCATAAGAATTCAAATTGGAATACTACAGAATCAAAAAGGGAAGCACTGAATTGCATGTGATCTCCCATGGATAGCAGGAACCTGTAGATGCCTAATTTCACAAATGCTTTACTTAATTCAGTTTTAGTTAGTTTGGTAGCTTTCAAACAAAAGAATCCTCACACTACCGGCTGTTAAAGGTAATGTTCCTGTGTTCACGGAGaccgcattcacggtaaacgctgtaTATGTCGGTACAATCAGAAAATGACCTTTAAATAGCGCATAGCCAACAAAGTGCTATCAGATTGAATCCTGGCCTTGAGCTGCTTACCACCTTCCGTTCTTTGGAAGACCAGATTTGAGGTGAATCAGTattgtttgtttaaaaaataaacaaatacatttcaGACAATTTGTTACAATGCAAGTTTTATAGGTCAATTTGGGGTTTTGGGGTCATGTTCTCTACAGGGCGCCATTTTAGACCAGGCCTCTGAAGAGGAATGAGAGGGATGCTCCCAGAGCTAAACCCAGGGACAAGAAGAAGGCCATAATGGCTCCAGCTGTCTCCGCTTCATGAGCAGCAACttttctgtggagagagagaatgacagccGATCAGGTGTGGTAAGATTTTTGGTGCAACCTCATTTCTGTCAACCTTGGAGACATTTTTCTCTCGTAATGACCCTTGCAACGTGAGTAAACTAACCATAACATTTTAAATAGACAGGAGTTCCAAAAATGAAATGAAAgccatttttctcagttccacgctatgagcagttaatgcctttttgcttggtagtaCAGAATTGCTTAGCGTTTACCATGTGTGTTATGCCTCGTCCTTCTAACAGACATTGTGACTTTAATAATTATCCCCCTATTTCTAAACTTTATTTGCCTAGCTAAAATGTTTGAATCCTTGACTAATGCTCAGCCAAGATCTTTCTTTACTTCAAAATCTATTCTAAATGTGCATCAGTCGGGCTTCAGACCAGGGCATAGCACCTTCTCGGCAGCATCACTGGTTTTAAATGAT

Function

NR:

description
RNA-directed DNA polymerase from mobile element jockey

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1652238 True 2331 lncRNA 0.39 2 35980006 36019231

Neighbor

gene id symbol gene type direction distance location
LOC110493827 tmem63b coding upstream 24359 35855110 ~ 35955647 (+)
LOC110493822 sde2 coding upstream 132546 35825533 ~ 35847460 (+)
LOC110493823 sde2 coding upstream 132549 35838159 ~ 35847457 (+)
LOC110493821 LOC106565008 coding upstream 155911 35794345 ~ 35824095 (+)
LOC100135837 LOC100135837 coding upstream 186283 35776496 ~ 35793723 (+)
LOC118940407 NA coding downstream 215061 36234292 ~ 36242642 (+)
LOC110493841 LOC106565021 coding downstream 390972 36410203 ~ 36417254 (+)
LOC110493174 LOC106582647 coding downstream 473051 36492282 ~ 36557771 (+)
mmp24 mmp24 coding downstream 554740 36573971 ~ 36641719 (+)
LOC118940420 NA coding downstream 641117 36660348 ~ 36665818 (+)
G1443357 NA non-coding upstream 4200 35975585 ~ 35975806 (+)
G1443356 NA non-coding upstream 5238 35974543 ~ 35974768 (+)
G1443353 NA non-coding upstream 8797 35970917 ~ 35971209 (+)
G1443352 NA non-coding upstream 10049 35969590 ~ 35969957 (+)
G1443349 NA non-coding upstream 17565 35962211 ~ 35962441 (+)
G1443400 NA non-coding downstream 100669 36119900 ~ 36120323 (+)
G1443401 NA non-coding downstream 101488 36120719 ~ 36121035 (+)
G1443402 NA non-coding downstream 102209 36121440 ~ 36122037 (+)
G1443403 NA non-coding downstream 102873 36122104 ~ 36122464 (+)
G1443414 LOC106565014 non-coding downstream 141797 36161028 ~ 36162245 (+)
G1443251 NA other upstream 228216 35746872 ~ 35751790 (+)
G1443221 NA other upstream 235364 35673964 ~ 35744642 (+)
LOC110493802 LOC106564779 other upstream 795466 35120694 ~ 35184540 (+)
LOC110493778 LOC106564798 other upstream 1677397 34290017 ~ 34317682 (+)
G1441315 NA other upstream 2003531 33976193 ~ 33976475 (+)
G1443844 NA other downstream 312004 36331235 ~ 36375374 (+)
G1444198 LOC106565031 other downstream 838335 36857566 ~ 36861009 (+)
G1444933 NA other downstream 1382966 37402197 ~ 37402492 (+)

Expression


Co-expression Network