G1443401


Basic Information

Item Value
gene id G1443401
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 36120719 ~ 36121035 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1652294
CAGATGCAGAATCAATATGACTTACTGTATGTGACGTGAGCTGTTTTATTAAGATGGATTATTCCTTGCATCCATGAGCAGGTTTGCTAAACATAGATTGTATCTACTTACAAAGCTTAGCTACTCCGTAGTTGTGCTGTCCTCATCTCACCTGTTGTTGGTCATACACTGAAGTCATGGAATTATTATATTGTTTCTCTCTTCCAATTCAACCACTACACATGTACTCGTATCCCCTTCTCTGAAATACCTTTTTGAACAACCTTAGTCTAACCAATGATACCCTAGAGAAACTGCAGCGCAAGCAAGCAAGCAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1652294 True 317 lncRNA 0.39 1 36120719 36121035

Neighbor

gene id symbol gene type direction distance location
LOC110493827 tmem63b coding upstream 165072 35855110 ~ 35955647 (+)
LOC110493822 sde2 coding upstream 273259 35825533 ~ 35847460 (+)
LOC110493823 sde2 coding upstream 273262 35838159 ~ 35847457 (+)
LOC110493821 LOC106565008 coding upstream 296624 35794345 ~ 35824095 (+)
LOC100135837 LOC100135837 coding upstream 326996 35776496 ~ 35793723 (+)
LOC118940407 NA coding downstream 113257 36234292 ~ 36242642 (+)
LOC110493841 LOC106565021 coding downstream 289168 36410203 ~ 36417254 (+)
LOC110493174 LOC106582647 coding downstream 371247 36492282 ~ 36557771 (+)
mmp24 mmp24 coding downstream 452936 36573971 ~ 36641719 (+)
LOC118940420 NA coding downstream 539313 36660348 ~ 36665818 (+)
G1443400 NA non-coding upstream 396 36119900 ~ 36120323 (+)
G1443369 NA non-coding upstream 90066 35991150 ~ 36030653 (+)
G1443361 NA non-coding upstream 101266 35982307 ~ 36019453 (+)
G1443358 NA non-coding upstream 101488 35980006 ~ 36019231 (+)
G1443370 slc29a1 non-coding upstream 116896 36002671 ~ 36003823 (+)
G1443402 NA non-coding downstream 405 36121440 ~ 36122037 (+)
G1443403 NA non-coding downstream 1069 36122104 ~ 36122464 (+)
G1443414 LOC106565014 non-coding downstream 39993 36161028 ~ 36162245 (+)
G1443415 NA non-coding downstream 45764 36166799 ~ 36167050 (+)
G1443420 NA non-coding downstream 56960 36177995 ~ 36178210 (+)
G1443251 NA other upstream 368929 35746872 ~ 35751790 (+)
G1443221 NA other upstream 376077 35673964 ~ 35744642 (+)
LOC110493802 LOC106564779 other upstream 936179 35120694 ~ 35184540 (+)
LOC110493778 LOC106564798 other upstream 1818110 34290017 ~ 34317682 (+)
G1441315 NA other upstream 2144244 33976193 ~ 33976475 (+)
G1443844 NA other downstream 210200 36331235 ~ 36375374 (+)
G1444198 LOC106565031 other downstream 736531 36857566 ~ 36861009 (+)
G1444933 NA other downstream 1281162 37402197 ~ 37402492 (+)

Expression


Co-expression Network