G1443420


Basic Information

Item Value
gene id G1443420
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 36177995 ~ 36178210 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1652313
gtcgagcagcagacaattcctgctcgtgtctgcctagcatcgctccctggatctcgacggctgagtggagaggatccgaagtcgctgggtccattcttggtcggattcttctgttacggtgcgtgaatgaggacccaaaagcgaattaacaaaacagagtttctttaatgacgaaacacacgtaggctcagatggacaggcagattccgacaggac

Function

NR:

description
PREDICTED: protein LDOC1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1652313 True 216 lncRNA 0.52 1 36177995 36178210

Neighbor

gene id symbol gene type direction distance location
LOC110493827 tmem63b coding upstream 222348 35855110 ~ 35955647 (+)
LOC110493822 sde2 coding upstream 330535 35825533 ~ 35847460 (+)
LOC110493823 sde2 coding upstream 330538 35838159 ~ 35847457 (+)
LOC110493821 LOC106565008 coding upstream 353900 35794345 ~ 35824095 (+)
LOC100135837 LOC100135837 coding upstream 384272 35776496 ~ 35793723 (+)
LOC118940407 NA coding downstream 56082 36234292 ~ 36242642 (+)
LOC110493841 LOC106565021 coding downstream 231993 36410203 ~ 36417254 (+)
LOC110493174 LOC106582647 coding downstream 314072 36492282 ~ 36557771 (+)
mmp24 mmp24 coding downstream 395761 36573971 ~ 36641719 (+)
LOC118940420 NA coding downstream 482138 36660348 ~ 36665818 (+)
G1443415 NA non-coding upstream 10945 36166799 ~ 36167050 (+)
G1443414 LOC106565014 non-coding upstream 15750 36161028 ~ 36162245 (+)
G1443403 NA non-coding upstream 55531 36122104 ~ 36122464 (+)
G1443402 NA non-coding upstream 55958 36121440 ~ 36122037 (+)
G1443401 NA non-coding upstream 56960 36120719 ~ 36121035 (+)
G1443421 NA non-coding downstream 1293 36179503 ~ 36179871 (+)
G1443424 NA non-coding downstream 14994 36193204 ~ 36213034 (+)
G1443429 NA non-coding downstream 46459 36224669 ~ 36225530 (+)
G1443842 NA non-coding downstream 124949 36303159 ~ 36303360 (+)
G1443251 NA other upstream 426205 35746872 ~ 35751790 (+)
G1443221 NA other upstream 433353 35673964 ~ 35744642 (+)
LOC110493802 LOC106564779 other upstream 993455 35120694 ~ 35184540 (+)
LOC110493778 LOC106564798 other upstream 1875386 34290017 ~ 34317682 (+)
G1441315 NA other upstream 2201520 33976193 ~ 33976475 (+)
G1443844 NA other downstream 153025 36331235 ~ 36375374 (+)
G1444198 LOC106565031 other downstream 679356 36857566 ~ 36861009 (+)
G1444933 NA other downstream 1223987 37402197 ~ 37402492 (+)

Expression


Co-expression Network