XLOC_003377 (BX571952.1)


Basic Information

Item Value
gene id XLOC_003377
gene name BX571952.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 17440591 ~ 17513632 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006622
TTAGGTTcggttccaatatgtactgcatcattttttacagttgtgcacaAAGGAGGAACATGTGAGGTGATCGCAGCACACCGATGTTGCAACAAGAACCGTATTGAGGAACGTTCCCAGACGGTCAAGTGTTCATGTTTACCAGGAAAAGTGGCTGGCACGACACGAAACAAACCCTCCTGTGTAGACGCCTCCATTGTGATTGGGAAGTGGTGGTGTGAGATGGAGCCATGTCTGGAGGGAGAAGAGTGCAAGACGCTACCAGACAACTCCGGCTGGATGTGTTCCTCTGGGAATAAGATCAAGACCACGAGGGTGAGGATCAAATTATTCACGTCAAGTCACgtcatgaccaatcaaatgctctcttgtATCTGA
>TCONS_00006623
ATGTGGCATCATGTTAAAGGAGGAACATGTGAGGTGATCGCAGCACACCGATGTTGCAACAAGAACCGTATTGAGGAACGTTCCCAGACGGTCAAGTGTTCATGTTTACCAGGAAAAGTGGCTGGCACGACACGAAACAAACCCTCCTGTGTAGACGCCTCCATTGTGATTGGGAAGTGGTGGTGTGAGATGGAGCCATGTCTGGAGGGAGAAGAGTGCAAGACGCTACCAGACAACTCCGGCTGGATGTGTTCCTCTGGGAATAAGATCAAGACCACGAGGGTGGCAATgtttcttaaaaacaaaacactatgcGCCTATACTCATTTGGTCCTGTAG
>TCONS_00006624
GTCAAACATGAAATAGTATCTCATATATGTGCAACtgatgtttatgtgtgtttgtgtttctgtatCCACAGAAGGAGGAACATGTGAGGTGATCGCAGCACACCGATGTTGCAACAAGAACCGTATTGAGGAACGTTCCCAGACGGTCAAGTGTTCATGTTTACCAGGAAAAGTGGCTGGCACGACACGAAACAAACCCTCCTGTGTAGACGCCTCCATTGTGATTGGGAAGTGGTGGTGTGAGATGGAGCCATGTCTGGAGGGAGAAGAGTGCAAGACGCTACCAGACAACTCCGGCTGGATGTGTTCCTCTGGGAATAAGATCAAGACCACGAGGGTGAGGGCTCGGAACACTCTGAacatcattacacacacacattcacttagCTACACAAATAAGGGCACGGCACAGACATTTATTGATTTTGTGGCAAAACTTTACTATATGCATAAGCTGAAATAA
>TCONS_00006625
GTCAAACATGAAATAGTATCTCATATATGTGCAACtgatgtttatgtgtgtttgtgtttctgtatCCACAGAAGGAGGAACATGTGAGGTGATCGCAGCACACCGATGTTGCAACAAGAACCGTATTGAGGAACGTTCCCAGACGGTCAAGTGTTCATGTTTACCAGGAAAAGTGGCTGGCACGACACGAAACAAACCCTCCTGTGTAGACGCCTCCATTGTGATTGGGAAGTGGTGGTGTGAGATGGAGCCATGTCTGGAGGGAGAAGAGTGCAAGACGCTACCAGACAACTCCGGCTGGATGTGTTCCTCTGGGAATAAGATCAAGACCACGAGGAACACCCAGCCATATTCCACTTTTTAGCTCTGAGGGCCACTCAATCTTCAGAAGCTCAGCGGCGTCCTTCTCCTCATCAAG
>TCONS_00006626
GTCAAACATGAAATAGTATCTCATATATGTGCAACtgatgtttatgtgtgtttgtgtttctgtatCCACAGAAGGAGGAACATGTGAGGTGATCGCAGCACACCGATGTTGCAACAAGAACCGTATTGAGGAACGTTCCCAGACGGTCAAGTGTTCATGTTTACCAGGAAAAGTGGCTGGCACGACACGAAACAAACCCTCCTGTGTAGACGCCTCCATTGTGATTGGGAAGTGGTGGTGTGAGATGGAGCCATGTCTGGAGGGAGAAGAGTGCAAGACGCTACCAGACAACTCCGGCTGGATGTGTTCCTCTGGGAATAAGATCAAGACCACGAGGATTCATCCCCGGACCTAA
>TCONS_00006627
GAAGGAGGAACATGTGAGGTGATCGCAGCACACCGATGTTGCAACAAGAACCGTATTGAGGAACGTTCCCAGACGGTCAAGTGTTCATGTTTACCAGGAAAAGTGGCTGGCACGACACGAAACAAACCCTCCTGTGTAGACGCCTCCATTGTGATTGGGAAGTGGTGGTGTGAGATGGAGCCATGTCTGGAGGGAGAAGAGTGCAAGACGCTACCAGACAACTCCGGCTGGATGTGTTCCTCTGGGAATAAGATCAAGACCACGAGGAACACCCAGCCATATTCCACTTTTTAGCTCTGAGGGCCACTCAATCTTCAGAAGCTCAGCGGCGTCCTTCTCCTCATCAAGATTCATCCCCGGACCTAACAAAGAGCTCCTTCACAGGCGGTGAATGTGGATTCTCTCTGTCAAAAAAATGGACGAAACCATTCATTCAAAGGGGTGTTTGACTGGATTACCTGTGAATGAACAATAAAGGAGGATAAATACACAATATTTGCTCATTCGGTGCCAAGGAATATATGAAAAATCGAAATAAAGCAGGCTAATCTGTGTTTTGATCAATGAGCCCAACGCTGCGGACTCAACAGTCCTGTACACTTCCGTCGATTTTCTGTGTTTCTCCTGACCACCTTCCTCTGGTTCTAAACTTATACAGCTTAGAGGAGCCGTTTACTGGATTTCAAATTATACCTGAAGACTTTACCTCCCTAGGTAAACTGGACAATCCTGATATAAGCTGTGAACGACTGTATGAAGGATCATGATGGATAAGCGCTGGTCTGTGAAAATGAGGAGGAAATCAATAGGAGATTTTTTCCATCCCTCCATCAATCTGTCATTGCGTCGTCCACGCTGGCTTTGGTAATAGACTGGGAGTTTGTGAAGCCCTACTGTTTCCCCTCCACTTCTGAGTTTATCACTCAGTGCTACTGTCTACATGCTGTTCGTTTTGGAAAATCCCCCCCGCAGGTCAAAGCTCACCCTCTCACCGTCTACACCTACTTGAGCCAGATATCTTTTTATTTGTCGGCATGCTCAATGTATTTTGTGGGAGCTTTGTATTGAAAgtaactgtatatatttctgtatatatacatatagatacatattAAAAGATATCATATGAAGATCTAACATGCCCATAAACCTGTTCAGTGGGACTATATTGATGGTCTTTGTTCCTCGGACAACAAGTACAATTAATCCTGAATTTAAAGCTGTTTGTGGAAGTAGATATTCTCTCAATGTAATTGAAGAcctgctttttttcttttgcttgacGACTTTTTCCGATGAatctaatatattttttaaaattcactAAACAGTTTTGCAGAAAAAAAGCATTACAGCCCAAACAAAATACGCTGAATTAGTCATGGGTATTTAAGTCATTGTCATTCATTTACAATGCAAACAAACTCATTTTCATGCAAATTAGGCTTATTAAAAACTGTGGATTATTCAAAGAACTATTTACTTGTTGAAATTAATGTTGTGCTACTACATTTTATGTTGATCATGACAGTACTAATTCAAAAGAGATGCTGTGACACATCAAGTCAACTAAGAATTAGTGCAGATTCAAGGCAAGTAATATGTTGTCGGCTCAGATTGTGTGGGGTCTTGgcctaaacattttaaaattagtaTTCTTCATTAAGATGAcagaaaaaccaaaacaaagactgcatacagtatatacaagCATCACACTTCACAAAATATCAGTCATCTTGATCTCCATTTGAAttctaatgctgagttcagactgcataaatttagccccgattttgactagccgacaggttttgagaaatcgcaggcAATCGGTGCTCATTCATGTGAgaaacaatcacacagtatgaactatcaaagacgcgatctgaaaGAATCGCAGATAAGTCATCAACACCCgtcagatatttggcatgctaaatatctggacctgtcagtgattcaaaatcatgccgtgtgaaatgtgtttgGTTAAAATGAACAttggcgatcacctacagcctaTGACAGAGCGGCATTCACTCGTATGAGTATCTGTAGACCAGTGAGAGGTTGGCTGAGAAGTTCAATTTGCTTCTTCTCAGTCTATTTGGACTCAAGAAATGGagtagtgtaaatttggcaggattACTCGTGTCCGTTTGACTTGTCGTCGGAGCAATATCATAGCCgggttgaaaaagaaaaaaaagttgaggaaaatgtgctaattcccttcaaaggcCAGGGGCCTTATGTaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000088837

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006622 False 378 processed_transcript 0.48 4 17440591 17497093
TCONS_00006623 False 339 processed_transcript 0.49 4 17441307 17494543
TCONS_00006624 False 463 processed_transcript 0.46 2 17441887 17494277
TCONS_00006625 False 418 processed_transcript 0.49 3 17441887 17500788
TCONS_00006626 False 355 processed_transcript 0.48 3 17441887 17511737
TCONS_00006627 True 2261 processed_transcript 0.41 4 17441957 17513632

Neighbor

gene id symbol gene type direction distance location
XLOC_003376 CR631124.1 coding upstream 111910 17328565 ~ 17328681 (+)
XLOC_003374 NA coding upstream 270414 17093078 ~ 17170177 (+)
XLOC_003375 CR769769.1 coding upstream 298704 17137848 ~ 17141887 (+)
XLOC_003373 kbtbd8 coding upstream 852547 16574625 ~ 16588044 (+)
XLOC_003372 slc25a26 coding upstream 1116016 16216909 ~ 16324575 (+)
XLOC_003378 CR589944.3 coding downstream 405511 17919143 ~ 17920013 (+)
XLOC_003379 NA coding downstream 416641 17930273 ~ 17932158 (+)
XLOC_003380 NA coding downstream 437931 17951563 ~ 17952558 (+)
XLOC_003381 NA coding downstream 443209 17956841 ~ 17963453 (+)
XLOC_003382 rpusd4 coding downstream 451057 17964689 ~ 18081864 (+)
XLOC_003369 CR854846.2 misc upstream 1317509 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 4728595 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 4746328 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 4754992 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 4760563 12679732 ~ 12680028 (+)
XLOC_003368 ctbs non-coding upstream 1356983 16070438 ~ 16083608 (+)
XLOC_003363 FP016142.2 non-coding upstream 1639195 15799383 ~ 15801396 (+)
XLOC_003392 BX296530.1 non-coding downstream 1162810 18676442 ~ 18676557 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000058_04923557_04926609 NA coding CI01000058 null 4923290 ~ 4927654 (+)